Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01254 ATGGACCTTACGAAGATATTCATTTTTAGGCCTGTAGGAGGAATTCATCTGGCGCAAATCAAGTTTGTTAAAGGTATGTCGTCGAAGATTGTGTATGAAGGTTGGATGGTGCGGTATGGCCGGCGGAAGATTGGCAGGTCCTTCATTCACATGCGGTATTTTGTGCTTGAATCTCGGTTACTGGCGTATTATAAGAGGAAGCCGCAGGATAATCAAGTTCCAATTAAGAGCATGCTAGTAGATGGAAACTGTAGAGTGGAGGATCGTGGCTTGAAGACGCACAATGGACATATGGTTTACGTCTTGTCTGTTTACAACAAGAAAGAGAAGTACCATCGAATTACGATGGCGGCCTTCAATATCCAAGAAGCACTACTATGGAAGGAGAAAATAGAGCTTGTCATTGATCTGCACCAAGGCTCACAACTTCCTAATGGGAACAAATTTATATCATTTGAGTATAAATCTGGGATGGATAATGGGAGGACTGCTTCCTCCTCAGATCATGAAAGTCAGATCAGTGCACAGGAAGATGAGGAGAATGCTCGTCCAAGTTTACTGCGAAGGACAACCTTTGGAAATGGACCTCCAGAGTCTGTATTTGATTGGACAAGGGAAATTGGACCAGATTTTTCAAATCAAAATGCCAATAGTCAAGCCTTTTCACGGAAGCATTGGCGTCTAGTTCAGTGCCAAAATGGACTTCGCATCTTTGAAGAGCTTGTGGAGGTTGACTACCTTCCAAGGAGCTATAGTAGGGCAATGAAAGCTGTTGGTGTAGTGGAGGCTACTTGTGAGGAAATCTTTGAACTTGTCATGAGCATGGATGGAACACGGTTTGAGTGGGACTGCAGTTTCCAATATGGTAGCTTGGTTGAAGAGGTGGATGGACATACGGCAATACTCTACCATAGGCTACAGCTAGACTGGTTTCCAATGTTGGTATGGCCCCGTGACCTCTGCTATGTGCGTTATTGGCGTCGGAATGACGATGGAAATTATGTTGTATTATTTCGCTCAAGGGAGCATGAGAATTGTGGTCCACAACCAGGGTATGTGAGGGCCCATATTGAGAGTGGAGGATTCAACATTTCACCTCTGAAACCTCGAAATGGAAAGCCAAGAACTCAGGTGCAGCATCTCATGCAGATTGATCTGAAAGGATGGGGTGTGGGCTATTTGTCATCGTTTCAGCAACATTGTCTCTTGCAAATGTTAAATAGTGTTGCTGGTAGTGGGGATTCCACATTCCATCAAGTTCCTAAAGCTTATTGGCATTTTCAAAGGCTGCGTGAATGGTTTGCACAAACAGATGAAAGGACTGCTCCTCTAAGAATACCAGTTATGGTAAATATGGCTTCATCTTCAGTTTCATCACAGAAGAGCCTGAAAGTTCAGGGGTCTAGCGTTCATGCTAGTTCTTCTGATCAAATGAATGCTGCAAATAGAAATTCTGTGATGTTGGATGAGTACTCTGACGAAGATGAAGAATATCAAATACCTGAGAATGAACCAGAGGCATACCCAAACGAGCAGGAGAATGATATCAAGAGAGCAGCCTTGGAAGAAGAATCAATTGATCGAATTGATTTATCCAGTTTCTCGGGAAATGTAAGGCACGATGATCGTGATAGTTCTCGAGACTGCTGGAGAATTTCTGATGGAAACAACTTTAGAGTTCGTAGCAAGACCTTTTGTTTCGATAAGACTAAGATTCCAGCTGGGAAGCATTTAATGGATCTGGTTGCTGTCGATTGGCTGAAGGACACAAAAAGAATGGACCACGTTGCCAGGCGTCAAGGCTGTGCAGCTCAAGTTGCTTCAGAAAAAGGTCTTTTCTCTATCGTCATAAACGTGCAAGTACCTGGTTCGACGCACTACAGCATGATATTTTATTTCGTGACGAAGGAACTAATTTCTGGATCTCTTTTGAAACGTTTTGTTGATGGCGACGATGAATTTCGCAACAGTAGGTTAAAACTCATTCCTTCAGTTCCCAAGGGTTCATGGATTGTTCGCCAAAGTGTTGGAAGTACGCCATGCTTATTGGGAAAAGCAGTTGATTGCAACTATATTCGAGGGCCCAAGTATTTAGAGGTCGATGTCGATATTGGCTCTTCGACAGTTGCTAATGGAGTTTTGGGACTCGTCATTGGTGTAATTACAACATTGGTGGTTGACATGGCTTTCCTTATACAGGCAAATACAACAGAAGAATTACCAGAGAGATTACTTGGAGCAGTGCGAATGTCTCATATTCAGCTCTCCTCAGCCATACCCTCTAACTTGGACTCATCCTCTGATTGA 2307 43.3 MDLTKIFIFRPVGGIHLAQIKFVKGMSSKIVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKRKPQDNQVPIKSMLVDGNCRVEDRGLKTHNGHMVYVLSVYNKKEKYHRITMAAFNIQEALLWKEKIELVIDLHQGSQLPNGNKFISFEYKSGMDNGRTASSSDHESQISAQEDEENARPSLLRRTTFGNGPPESVFDWTREIGPDFSNQNANSQAFSRKHWRLVQCQNGLRIFEELVEVDYLPRSYSRAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMLVWPRDLCYVRYWRRNDDGNYVVLFRSREHENCGPQPGYVRAHIESGGFNISPLKPRNGKPRTQVQHLMQIDLKGWGVGYLSSFQQHCLLQMLNSVAGSGDSTFHQVPKAYWHFQRLREWFAQTDERTAPLRIPVMVNMASSSVSSQKSLKVQGSSVHASSSDQMNAANRNSVMLDEYSDEDEEYQIPENEPEAYPNEQENDIKRAALEEESIDRIDLSSFSGNVRHDDRDSSRDCWRISDGNNFRVRSKTFCFDKTKIPAGKHLMDLVAVDWLKDTKRMDHVARRQGCAAQVASEKGLFSIVINVQVPGSTHYSMIFYFVTKELISGSLLKRFVDGDDEFRNSRLKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEVDVDIGSSTVANGVLGLVIGVITTLVVDMAFLIQANTTEELPERLLGAVRMSHIQLSSAIPSNLDSSSD 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8935237 8949541 - CmoCh16G012540.1 Cmo16g01254 400289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01254 768 Pfam Protein ENHANCED DISEASE RESISTANCE 2, C-terminal 550 753 IPR009769 -
Cmo16g01254 768 CDD PH 32 131 - -
Cmo16g01254 768 MobiDBLite consensus disorder prediction 491 513 - -
Cmo16g01254 768 ProSiteProfiles START domain profile. 226 388 IPR002913 GO:0008289
Cmo16g01254 768 Gene3D - 226 416 IPR023393 -
Cmo16g01254 768 Pfam START domain 251 393 IPR002913 GO:0008289
Cmo16g01254 768 MobiDBLite consensus disorder prediction 160 194 - -
Cmo16g01254 768 SMART PH_update 30 138 IPR001849 -
Cmo16g01254 768 SUPERFAMILY Bet v1-like 213 390 - -
Cmo16g01254 768 SMART START_1 206 418 IPR002913 GO:0008289
Cmo16g01254 768 PANTHER ENHANCED DISEASE RESISTANCE-RELATED 29 761 IPR045096 -
Cmo16g01254 768 CDD START 225 394 - -
Cmo16g01254 768 PANTHER PROTEIN ENHANCED DISEASE RESISTANCE 2-LIKE 29 761 - -
Cmo16g01254 768 SUPERFAMILY PH domain-like 27 146 - -
Cmo16g01254 768 ProSiteProfiles PH domain profile. 29 136 IPR001849 -
Cmo16g01254 768 Gene3D - 25 142 IPR011993 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01254 - - - csv:101209463 1380.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01276 Cmo-Chr5:9894554 Cmo16g01254 Cmo-Chr16:8935237 1.81E-31 dispersed
Cmo12g01192 Cmo-Chr12:10735899 Cmo16g01254 Cmo-Chr16:8935237 1.52E-92 dispersed
Cmo14g01549 Cmo-Chr14:12384828 Cmo16g01254 Cmo-Chr16:8935237 1.67E-45 dispersed
Cmo15g00474 Cmo-Chr15:2146462 Cmo16g01254 Cmo-Chr16:8935237 1.95E-112 dispersed
Cmo16g01254 Cmo-Chr16:8935237 Cmo06g00616 Cmo-Chr6:3047272 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g809 . . . . . . . . . Cmo16g01254 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g01207 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006393 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 5 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g01254 Cmo_Chr16 FPKM 18.154856 22.45623 7.113307 8.397598 12.09358 9.415154 10.21816 25.323917 25.906872 29.89662