Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01257 ATGTTTACATGCATAGCATGTACGAAACAGACAGACGACGGGGGTGAGGATGGGGCTGCGCGTGGTAGTGGCACGCCTAGTACAAAGGAAGCCGTCAAAAGCCTGACAACACAGATTAAGGACATGGCGTTGAAATTCTCCGGTGCTTATAGACAGTGCAAACCCTGCACAGGCTCCAGTAGCTATAAGAAAGGACAGCGACCTTACCCAGATTTTGACACTGCTTCAGAAGGGGTTCCATACCCCTACATAGGAGGGGCTAGTGCAAGCTCAACCCCTGCCTGGGACTTCCCTCGTGTTAATCGCCACCCACATACCAGATCTGACTCTAGATTTAAAGGGGTCTTCCGAGGAGATCAGACTCCTGGAGCCGATTCCTCCATATCAGCATGTGATGTGGTGCTCGAGGATGAGGATGAGTCGAAAGAGTGGATGGCACAGGTGGAGCCTGGTGTTCACATCACTTTTGTGTCCCTACCCAATGGAGGCAATGATTTAAAACGAATTCGTTTCAATCGAGAAATGTTTAACAAATGGCAAGCTCAGCGTTGGTGGGGCGAGAACTATGACAGAATAACGGAGCTCTATAATGTCCAGAGATTCAACCAGCAAGCTCTTCATACGCCACCAAGAACTGAGGACGGGAGGGATTCTTCCTACTCAAAGATGGGAAGGGATAGTCCGATGACTTCAGGGAACAAAGATTGGACGCCAAGAAACTATAAACCTTCTGGGAGTAAAGGATTTCCATCTGACCAGCATTTTGACCAAGGAAGCAGTCACCATTATGCAGGTTCAAGTGCCTATCCAGCAGGTAGCGCGAAAGGCGACATGTCGTCTATGGAAGCATCACGCACAACTACCTCTTCTAGAGACGAGCCTTCAATTTCCATTAGCAATGCAAGCGACATCGAGGCGGAGTGGGTCGAGGAAGATGATCCCGGGGTCTATATAACTATCAGGCAGCTTGTTGATGGCACTAGAGAGCTTCGTCGTGTCAGATTCAGCCGTGAAAAGTTCGGGGAAATGAACGCGAAGCAATGGTGGGATGAGAACAGGGAGAGGATCCAAGCTCAATACCTTTAA 1086 49.26 MFTCIACTKQTDDGGEDGAARGSGTPSTKEAVKSLTTQIKDMALKFSGAYRQCKPCTGSSSYKKGQRPYPDFDTASEGVPYPYIGGASASSTPAWDFPRVNRHPHTRSDSRFKGVFRGDQTPGADSSISACDVVLEDEDESKEWMAQVEPGVHITFVSLPNGGNDLKRIRFNREMFNKWQAQRWWGENYDRITELYNVQRFNQQALHTPPRTEDGRDSSYSKMGRDSPMTSGNKDWTPRNYKPSGSKGFPSDQHFDQGSSHHYAGSSAYPAGSAKGDMSSMEASRTTTSSRDEPSISISNASDIEAEWVEEDDPGVYITIRQLVDGTRELRRVRFSREKFGEMNAKQWWDENRERIQAQYL 361
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
16 8964554 8970308 + CmoCh16G012570.1 Cmo16g01257 400292
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01257 361 MobiDBLite consensus disorder prediction 203 299 - -
Cmo16g01257 361 Pfam Transcription factor BRX N-terminal domain 23 56 IPR027988 -
Cmo16g01257 361 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 361 IPR044532 -
Cmo16g01257 361 MobiDBLite consensus disorder prediction 11 30 - -
Cmo16g01257 361 MobiDBLite consensus disorder prediction 223 266 - -
Cmo16g01257 361 ProSiteProfiles BRX domain profile. 306 361 IPR013591 -
Cmo16g01257 361 PANTHER BREVIS RADIX-LIKE PROTEIN-RELATED 1 361 - -
Cmo16g01257 361 ProSiteProfiles BRX domain profile. 142 197 IPR013591 -
Cmo16g01257 361 MobiDBLite consensus disorder prediction 279 299 - -
Cmo16g01257 361 Pfam Transcription factor regulating root and shoot growth via Pin3 305 360 IPR013591 -
Cmo16g01257 361 Pfam Transcription factor regulating root and shoot growth via Pin3 142 196 IPR013591 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cmo06g00612 Cmo16g01257 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g01257 Cmo-Chr16:8964554 Cmo17g00676 Cmo-Chr17:6922676 3.82E-09 dispersed
Cmo16g01257 Cmo-Chr16:8964554 Cmo06g00612 Cmo-Chr6:3019440 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01257 - - csv:101210860 716.457