Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01260 ATGGTAGCATCAATGGCGCCTTTTAAGCTGACGGAAGGAGCCGTGATGGTGATATGCAAGAGAGAATCGTCGGCAGAGACGTTCCAGCCGGTTGTACAAGTAATTGACTTAAAATTGGTTAACACTACGCAACAATCGGGCAGCGAGAGGTATAGATTGTTGCTTTCTGATGGAACTCATTACCAGCAAGGAATGCTGGGCACTCAGCTCAATGGATTGGTTAAGTCCGGGAAGTTACAGAAAGGTTCCATCGTTCAATTGCGGCAGTATGTTTGTAATCCCGTTCAAGAACGCCTAATTATAATCGTCATTGAGTTGGATGTGATAAAGGAAATGTGTGACTTTATTGGCGAGCCTGTTCCAGCAACAAGATCAGTATCAGCCGCATTTAGTGGAAACCCCCAATCCTCTATGGGGGCTTCATCCGGCAGCGGAATACTTGGTAATGTGAATGTATCTGGTGCGTCTTTTGAACAGCCTAAAGTGAATCAATCACAAGTACCGCATGTGGGATCTCATTTTAACACTCCTAATTCTTGGACAAGGTTTAACGGTTCATCTCCTGTAACTGGGTCGTATGGTGATCAGAAGATGGCATACCACAACAATGGATCAGATATTCCCAGGCCACCTCTAAATGCTTATGCTTATGCCCCTCCTCAGCCAATACATCAGCAGCCACCTTCGATGTACAGTAACAGGGGAGGACCGGTAGCAAAAAATGAAGCTCCCCCAAGGATAATGCCTATTACTGCTCTGAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCGAAAGGAGAACTTAGACACTACAATAATCCTCGTGGAGATGGGAAAGTGTTTTCATTTGATCTACTTGATGCATGCGGTGGAGAAATACGAGCAACATGCTTCAATACAGTAGCTGATCAGTTTTACAACCAGATTGAATCTGGTAAAGTATACTTCATTTCTAAAGGAAGCTTGAAACCTGCACAAAAGAACTATAACCATCTCAATAATGACTTTGAAATATTTCTTGAAAACACATCAACAATCCAAGCTTGCTTTGAGGATGACCAATCAATCCCCCATCAGCAGTTTCATTTCCATCACATTAGTGAGATTGAGGGCATGGGTAGCAACAGTGTTGTAGATGTAATTGGTGTTGTTTCTTCCATTAATCCTGCAACGTCTCTCATGAGAAAAAATGGTACCGAGACTCAGAAGAGATCCCTTCAGTTGAAAGATATGTCTGGCCGAAGCGTCGAATTGACTCTTTGGGGAAACTTTTGTCAAGCAGAAGGGCAAAAATTGCAAAACATGTGTGACTCAGGGTTGTTCCCAGTTTTGGCTGTGAAATCTGGTAGAGTGAGCGACTTCAATGGGAAGGCGGTGGGAACCATTTCAACAAGTCAGCTTTTCGTAGAGCCAGATTTCCCCGAGGCTCGTACATTAAGAGGGTGGTTCGAAAAGGAAGGAAGGAGTACTCCTTCTGTCTCCATATCCAGGGAAGTTGCTACCATGGGCAGGACAGATGTCCGTAAGACCATATCCCAAATAAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCAGATTGGATCACTGTTAGTGCAACTGTTTCATTCGTTAAGGTTGATAATTTCTGTTACACAGCATGTCCTATCATGATCGGGGATCGTCAATGCAGCAAAAAGGTTACAAATAACGGAGATGGAAAATGGAGATGCGACCGGTGTGATCAGTCTGTCGACGAATGTGACTACAGGTACATATTGCAGCTGCAAATACAGGATCATACTGGCTTAACTTGGGTGACTGCATTTCAAGAAGGCGGTGAGGAGATCATGGGCTTACCTGCAAAAAGATTGTATTATTTGAAGTACGAAGAACAAGATGATGAAAAATTTGCAGAAATCATCCGTAAGGTTCTTTTTACAAAATTTATTATGAAGTTGAAAGTAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTGAAATCAACTGTCATGAAGGCAGAAAGCATTAACTTTTCGACCGAGTCCAGGTTTCTTCTAGATTTGATGGAAAAGCTCAGGGCAGGGAACACCATACAAAATCCTGGAGTTTTTCGCCCCGGATTGGAGAATATAGGTGGTGGACAGTTCGTGTCGCCCATTCGAAATAGTACCAATAATGTTGGCAGAGAATATGGTACACCGAACCGAGGTGTTCAGTATGGGGACCATCACAACAGTTCTTGGCCTACTCCATCCACACTGCATAACTCGCGCACGTACTGCAACAGCTGTGGGGGATCGGGTCACAGCTCAATGAACTGTCCGAGTATCATCAGCAGCCCTGCACCATCTGTTGGAGGAGGGATGTACTTAAATCGAGTTTCAGGCTCGTCTGGTCGTGACTCTGGTGAATGCTTCAAATGCCATCAAACCGGGCACTGGGCTAGGGATTGCCCTGGTTTGGCCACTTTCCCTCCAGCTTATGGTAACAGTGGCTTCACGGCTAGGTGA 2502 44.48 MVASMAPFKLTEGAVMVICKRESSAETFQPVVQVIDLKLVNTTQQSGSERYRLLLSDGTHYQQGMLGTQLNGLVKSGKLQKGSIVQLRQYVCNPVQERLIIIVIELDVIKEMCDFIGEPVPATRSVSAAFSGNPQSSMGASSGSGILGNVNVSGASFEQPKVNQSQVPHVGSHFNTPNSWTRFNGSSPVTGSYGDQKMAYHNNGSDIPRPPLNAYAYAPPQPIHQQPPSMYSNRGGPVAKNEAPPRIMPITALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDACGGEIRATCFNTVADQFYNQIESGKVYFISKGSLKPAQKNYNHLNNDFEIFLENTSTIQACFEDDQSIPHQQFHFHHISEIEGMGSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQKLQNMCDSGLFPVLAVKSGRVSDFNGKAVGTISTSQLFVEPDFPEARTLRGWFEKEGRSTPSVSISREVATMGRTDVRKTISQIKDERLGTSEKPDWITVSATVSFVKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGLPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKVKEETFSDEQRVKSTVMKAESINFSTESRFLLDLMEKLRAGNTIQNPGVFRPGLENIGGGQFVSPIRNSTNNVGREYGTPNRGVQYGDHHNSSWPTPSTLHNSRTYCNSCGGSGHSSMNCPSIISSPAPSVGGGMYLNRVSGSSGRDSGECFKCHQTGHWARDCPGLATFPPAYGNSGFTAR 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8986534 8989711 - CmoCh16G012600.1 Cmo16g01260 400295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01260 833 SUPERFAMILY Nucleic acid-binding proteins 246 358 IPR012340 -
Cmo16g01260 833 Pfam OB-fold nucleic acid binding domain 260 341 IPR004365 GO:0003676
Cmo16g01260 833 SMART c2hcfinal6 757 773 IPR001878 GO:0003676|GO:0008270
Cmo16g01260 833 SMART c2hcfinal6 801 817 IPR001878 GO:0003676|GO:0008270
Cmo16g01260 833 Gene3D - 359 497 IPR012340 -
Cmo16g01260 833 Gene3D - 498 689 IPR012340 -
Cmo16g01260 833 Gene3D - 246 355 IPR012340 -
Cmo16g01260 833 Gene3D - 8 123 IPR012340 -
Cmo16g01260 833 CDD RPA1_DBD_C 515 688 IPR013955 -
Cmo16g01260 833 CDD RPA1_DBD_B 381 488 - -
Cmo16g01260 833 Pfam Replication protein A OB domain 370 473 IPR031657 -
Cmo16g01260 833 SUPERFAMILY Nucleic acid-binding proteins 512 689 IPR012340 -
Cmo16g01260 833 PANTHER REPLICATION FACTOR A 1, RFA1 6 722 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cmo16g01260 833 SUPERFAMILY Nucleic acid-binding proteins 365 493 IPR012340 -
Cmo16g01260 833 CDD RPA1_DBD_A 249 351 - -
Cmo16g01260 833 SUPERFAMILY Nucleic acid-binding proteins 8 117 IPR012340 -
Cmo16g01260 833 MobiDBLite consensus disorder prediction 160 183 - -
Cmo16g01260 833 Gene3D - 753 820 - -
Cmo16g01260 833 Pfam Replication factor-A C terminal domain 531 682 IPR013955 -
Cmo16g01260 833 Pfam Zinc knuckle 801 816 IPR001878 GO:0003676|GO:0008270
Cmo16g01260 833 ProSiteProfiles Zinc finger CCHC-type profile. 802 816 IPR001878 GO:0003676|GO:0008270
Cmo16g01260 833 Pfam Replication factor-A protein 1, N-terminal domain 10 111 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cmo16g01260 833 PANTHER REPLICATION PROTEIN A SUBUNIT 6 722 - -
Cmo16g01260 833 ProSiteProfiles Zinc finger CCHC-type profile. 758 773 IPR001878 GO:0003676|GO:0008270
Cmo16g01260 833 SUPERFAMILY Retrovirus zinc finger-like domains 785 820 IPR036875 GO:0003676|GO:0008270
Cmo16g01260 833 CDD RPA1N 13 110 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cmo16g01260 833 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 236 688 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00609 Cmo16g01260 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00212 Cmo-Chr11:1048642 Cmo16g01260 Cmo-Chr16:8986534 7.51E-87 dispersed
Cmo12g01346 Cmo-Chr12:11641987 Cmo16g01260 Cmo-Chr16:8986534 2.80E-07 dispersed
Cmo16g01260 Cmo-Chr16:8986534 Cmo06g00609 Cmo-Chr6:3004021 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01260 K07466 - csv:101211358 1429.46