Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01270 ATGGAATCCCAATCAGAAGCCATGGAAGACAGCATAGCGACCATCAAAGACAAGCGTCAACAGCTCGAAGCTCGCATTCTAGCCCAACACTCGAACCAGTTGGAGCTCCTCTCTTCTCTTGAAGCACTGGTTCCTGATCTCGTCTCTTCCCTCGACCTCTCTCTCAAGGTTGTGACCTCCTTCAATGGCCGCCCCTTTGCTCCTACACCAGCTCTTCCTGAACCTAAAAACAAACCCTCTAAGTACCCTTTGGTGGCTACTAACTCTATGCCCCACAAAACCCGCCTTAATCCTCTTTCTTCTGGAGAAGCGAAACCCGGCATTCAGAAGAATCAAAATGCAAAGGCGTTCCCGGAATCGAATCCCAATCGGAAGCGAGCTCGCCAAACGGACGGCGGGAAGTTTTCGATGGATGATAGTGGAAGCCCTTTGTCGGTTGTGCGGTCGATGGTGGCGGTTAGTTTACTCGAACGGGTGCCTTTTACGGCGATTGATTCTTCGACGGTGTTGAGGAAATTGGAGAATGATCAGAAGGCTACGACGGCGGAGAAGGCGGCGTTGAGGGAATTAGGTGGCGATTCTGGTGCGATACTGGCGGTAGAGATGGCTTTGAGGTCGATGGCGGAGGATTGCGGTGGGGTTGAGTTGGAGGAGTTTGTGGTGAGTGGGAAGTCTCGAGTTATGGTGTTGGGGATTGATCGAACTCGGCTCATGAAGGAACTGCCTGAGAGTGCTAACTTTCAATTGCAGGAATCGAGTTTGGGAGAGGGTAATTCGAGCCATAAACAGAATCAACAAGTGGTGGGCGGCGGCGGCGGTGGTGGTGGTGGTGTGGATGTTCTTGGCGGCGTGTTTGGGATGGGAGGGCCAATGCCAAGGCCAATACCGGAGATGTGGATGGGGCATGGAGATCCCAATATGCAGGGACTGACACACATGTTTCCGGCGAGTGGACCAGCAGGTGCCATGGCTGGGACAAGGGGTGCGCCTAGGATGATGGGAATGATGGGGATGGCTCGAGGGATGGGACTCCCACCATTGCACAGACCATTGATGGGGCCAAATGCAGCCATGGCTGGCCCCATTTCAATGCCGCAGAAGCTTAAAACTGAAGAGGATGAACTGAAAGATCTCGAGGCCTTGTTGAGCAAGAAGTCCTTTAAAGAAATACAAAAGTCTAAGACTGGTGAGGAGCTTTTGGACCTCATTCACCGGCCAACTGCTAGGGAAACTGCTGTGGCTTCAAAGTTTAAAACTAAAGGTGGTTCGCAACTGAAGGAATACTGCTCGTCCTTGACAAAAGAGGACTGTCGGCGTCAATCTGGCTCGTTTATCGCATGTGAGAAGGTTCATTTTCGGCGAATAATTGCTCCACATACAGACATTAATCTGGGTGACTGCTCTTTTCTTGATACTTGTCGGCACATGAAGACATGCAAGTATGTTCATTACGAGCTCGATCCAATTCAAGATGTGCCACCGATGCTGATGGGAGCTGGATCTATATCTATTCCGAAACCGCTAAAGCCTCAACGAGCTGAATATTGTTCCGAAGTGGAACTTGGTGAATCGCAATGGATTAACTGTGATATTCGTAATTTTAGAATGGATATTTTGGGGCAATTTGGAGTGATTATGGCTGATCCACCGTGGGATATCCATATGGAATTGCCTTACGGGACAATGGCGGATGACGAAATGCGCAATCTTAACGTTCCTGCGTTACAGACTGATGGTTTGATTTTTCTTTGGGTCACTGGACGTGCAATGGAACTTGGAAGAGAATGTTTAGAACTATGGGGATACAAGCGTGTTGAGGAGCTTATATGGGTTAAGACAAATCAGCTTCAAAGAATTATTAGAACAGGGCGGACAGGCCATTGGCTCAATCATAGTAAGGAGCATTGCCTTGTTGGAATAAAGGGTAACCCAGAAGTTAACAGGAATATTGATACAGATGTTGTTGTTGCCGAGGTTCGGGAAACAAGTCGTAAACCGGATGAGATGTACCCTTTGCTTGAGAGGATAAGTCCAAGAACAAGGAAGCTAGAATTGTTTGCTCGGATGCACAACACTCACGCGGGTTGGATATCTCTTGGCAATCAATTGAGTGGAGCTCGATTAGTTGACGAAGGACTAAGAGCAAGGTTCAAGGCTGCATATCCAAACGTGGAGGTCCAACCGGCGTCCCCTCCAAGGGCTTCAATGGACATTGACTCTGGGGCTGCCCAACTCAGGAGCCCTTTTGCAGTATCAGACCCAAAGCCAGCATATGGGGACCCTACAATTCCCGAGGTACCATATGCAGCCGCAGGTACCCCAGATAAAGCCATGACAGTAGGAGTTGACACGGGTTTCTCAACACCGCGTCTCAAAATCGTGAAATGTAGCTCGGAATCGAACGATGAAGCTCAAAACAATGTCAATTTGAATAATGCTTTGTCCAGCATGGTCGGTGAGCAGATTGAGGAACTTTTGAACAAGGAAGAGAATAGGAGTTTGCTCGATGGCTTGGAGAAGGCGTCGATGAGAGTTGAAATCGCCAAAAGGCAGTTGGCTGAGATCGAGAAACAGGAACTTGAACTCAAACGATTCAAGGATTATATTAACCAGCTCGAAAGTAGAGCATCGGAGATTGAAGAATGTCAAAAGGAGATATTGGAGGCAAGAGGGATGATCGAGGAGGCCGAGCGCTCTCTCTCACAAAGCGAGGGTGGAAATGCAAAAAGAGACGTGGAAGATGGAGGAATTGACAGAGATGAAGAGAGATTGGAATCTGTAAAAGCAGCGTCCATATCAGCCATTGTTGGCACACTTGCAGGGCTGCCTATCTTTCTTAATCAAGTGACCAGCATTTCTCAGCTTGCACTCCCTACTGCAATCACCTTTATTAGCTGTGCCTTGTTTGGAGTTACATTCCGATACACAATAAGGAGAGACTTGGATAATATTCAGCTCAAGACTGGAACATCTGCCGCTTTCGGTTTCGTTAAAGGTCTTGCAACACTAGATGGTGGAGTACCTCTGGAATTTAATGCTGAGAGTTTCTCATCACATGTCACTGATGCTGCTGTGTATGTATCTGAAAACCTTTATATATTTATTTCTGCTGCTGTTGCACTGGAATTCTGTTTCAAGATGAGGTTATTAAGCCCTTTTCCTATAAGAAAATCAGTATAA 3180 47.74 MESQSEAMEDSIATIKDKRQQLEARILAQHSNQLELLSSLEALVPDLVSSLDLSLKVVTSFNGRPFAPTPALPEPKNKPSKYPLVATNSMPHKTRLNPLSSGEAKPGIQKNQNAKAFPESNPNRKRARQTDGGKFSMDDSGSPLSVVRSMVAVSLLERVPFTAIDSSTVLRKLENDQKATTAEKAALRELGGDSGAILAVEMALRSMAEDCGGVELEEFVVSGKSRVMVLGIDRTRLMKELPESANFQLQESSLGEGNSSHKQNQQVVGGGGGGGGGVDVLGGVFGMGGPMPRPIPEMWMGHGDPNMQGLTHMFPASGPAGAMAGTRGAPRMMGMMGMARGMGLPPLHRPLMGPNAAMAGPISMPQKLKTEEDELKDLEALLSKKSFKEIQKSKTGEELLDLIHRPTARETAVASKFKTKGGSQLKEYCSSLTKEDCRRQSGSFIACEKVHFRRIIAPHTDINLGDCSFLDTCRHMKTCKYVHYELDPIQDVPPMLMGAGSISIPKPLKPQRAEYCSEVELGESQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGRECLELWGYKRVEELIWVKTNQLQRIIRTGRTGHWLNHSKEHCLVGIKGNPEVNRNIDTDVVVAEVRETSRKPDEMYPLLERISPRTRKLELFARMHNTHAGWISLGNQLSGARLVDEGLRARFKAAYPNVEVQPASPPRASMDIDSGAAQLRSPFAVSDPKPAYGDPTIPEVPYAAAGTPDKAMTVGVDTGFSTPRLKIVKCSSESNDEAQNNVNLNNALSSMVGEQIEELLNKEENRSLLDGLEKASMRVEIAKRQLAEIEKQELELKRFKDYINQLESRASEIEECQKEILEARGMIEEAERSLSQSEGGNAKRDVEDGGIDRDEERLESVKAASISAIVGTLAGLPIFLNQVTSISQLALPTAITFISCALFGVTFRYTIRRDLDNIQLKTGTSAAFGFVKGLATLDGGVPLEFNAESFSSHVTDAAVYVSENLYIFISAAVALEFCFKMRLLSPFPIRKSV 1059
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9060569 9072139 + CmoCh16G012700.1 Cmo16g01270 400305

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01270 1059 PANTHER N6-ADENOSINE-METHYLTRANSFERASE 1 735 - -
Cmo16g01270 1059 Coils Coil 5 25 - -
Cmo16g01270 1059 Coils Coil 170 190 - -
Cmo16g01270 1059 Pfam MT-A70 542 702 IPR007757 -
Cmo16g01270 1059 Coils Coil 838 875 - -
Cmo16g01270 1059 MobiDBLite consensus disorder prediction 252 267 - -
Cmo16g01270 1059 Coils Coil 879 899 - -
Cmo16g01270 1059 ProSiteProfiles MT-A70-like family profile. 504 722 IPR007757 -
Cmo16g01270 1059 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 522 682 IPR029063 -
Cmo16g01270 1059 PANTHER N6-ADENOSINE-METHYLTRANSFERASE CATALYTIC SUBUNIT 1 735 - -
Cmo16g01270 1059 MobiDBLite consensus disorder prediction 897 917 - -
Cmo16g01270 1059 MobiDBLite consensus disorder prediction 96 140 - -
Cmo16g01270 1059 MobiDBLite consensus disorder prediction 104 119 - -
Cmo16g01270 1059 MobiDBLite consensus disorder prediction 252 273 - -
Cmo16g01270 1059 Coils Coil 368 388 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01270 K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] - csv:101210377 1331.62
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00594 Cmo16g01270 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00376 Cmo-Chr4:1850495 Cmo16g01270 Cmo-Chr16:9060569 5.46E-34 dispersed
Cmo16g00233 Cmo-Chr16:1021919 Cmo16g01270 Cmo-Chr16:9060569 4.26E-34 dispersed
Cmo16g01270 Cmo-Chr16:9060569 Cmo06g00594 Cmo-Chr6:2930529 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g223 . . . . . . . Bma14g00107 Cmo06g00594 Cmo16g01270 . . . . . . . . . . . . . . Cla10g00089 Cam10g0089 Cec10g0093 Cco10g0095 Clacu10g0090 Cmu10g0937 Cre10g0351 . . . . Lsi07g01118 . . Cme06g02398 Blo03g00810 . Bda07g00146 . . . . . . . . Cma06g00592 Cma16g01226 Car06g00522 Car16g01154 Cpe08g00911 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009638 1 0 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g01270 Cmo_Chr16 FPKM 121.46489 130.688324 132.430679 136.316864 110.784996 104.097214 106.109451 210.33136 227.139526 222.620529