Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo16g01274 | ATGGGCAGTATGGGGGGAAGGCAAAGAACTTACAGCGCCAATTCGACTGATTATAAGCTTCTTGAAGAGATTGGTTATGGTGCTAGTGCCACTGTTTTTAGAGCGATCTATACTCCGTCTAATGAAGTTGTCGCCATCAAATGTTTGGATCTTGATCGCTGCAATAAGGGTTCTTGTTTGCACCTAATGAAGACAGCGTACTCAGATGGCTTTGAAGAGGTTGCTATTTGTTCTATCCTGAAAGAGACTCTTAAAGCTTTGGAGTACCTTCATCGCCAGGGACACATACATCGGGATGTGAAGGCTGGAAATATACTACTTGATAGTAATGGGGCTGTGAAGCTTGCTGATTTTGGTGTTTCAGCTTGCATGTTTGAAACAGGCGATAGACAGCGCGCCAGAAATACCTTCACGGGAACCCCATGCTGGTAA | 432 | 44.68 | MGSMGGRQRTYSANSTDYKLLEEIGYGASATVFRAIYTPSNEVVAIKCLDLDRCNKGSCLHLMKTAYSDGFEEVAICSILKETLKALEYLHRQGHIHRDVKAGNILLDSNGAVKLADFGVSACMFETGDRQRARNTFTGTPCW | 143 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 9085081 | 9087258 | - | CmoCh16G012740.1 | Cmo16g01274 | 400309 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo16g01274 | 143 | Gene3D | Transferase(Phosphotransferase) domain 1 | 62 | 143 | - | - | |
Cmo16g01274 | 143 | Gene3D | Phosphorylase Kinase; domain 1 | 4 | 61 | - | - | |
Cmo16g01274 | 143 | SUPERFAMILY | Protein kinase-like (PK-like) | 13 | 143 | IPR011009 | - | |
Cmo16g01274 | 143 | SMART | serkin_6 | 18 | 143 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo16g01274 | 143 | PANTHER | PROTEIN KINASE SUPERFAMILY PROTEIN | 6 | 56 | - | - | |
Cmo16g01274 | 143 | PANTHER | PROTEIN KINASE SUPERFAMILY PROTEIN | 56 | 143 | - | - | |
Cmo16g01274 | 143 | ProSiteProfiles | Protein kinase domain profile. | 1 | 143 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo16g01274 | 143 | ProSitePatterns | Protein kinases ATP-binding region signature. | 24 | 47 | IPR017441 | GO:0005524 | |
Cmo16g01274 | 143 | Pfam | Protein kinase domain | 51 | 143 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo16g01274 | 143 | PANTHER | SERINE/THREONINE-PROTEIN KINASE FRAY2 | 6 | 56 | - | - | |
Cmo16g01274 | 143 | PANTHER | SERINE/THREONINE-PROTEIN KINASE FRAY2 | 56 | 143 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo16g01274 | Cmo-Chr16:9085081 | Cmo14g01826 | Cmo-Chr14:13910049 | 5.53E-32 | dispersed | |
Cmo16g01274 | Cmo-Chr16:9085081 | Cmo06g00592 | Cmo-Chr6:2913131 | 4.34E-88 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74983 | PF00069 | Pkinase | 7.70E-19 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo16g01274 | - | - | csv:101213683 | 259.225 |