Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01274 ATGGGCAGTATGGGGGGAAGGCAAAGAACTTACAGCGCCAATTCGACTGATTATAAGCTTCTTGAAGAGATTGGTTATGGTGCTAGTGCCACTGTTTTTAGAGCGATCTATACTCCGTCTAATGAAGTTGTCGCCATCAAATGTTTGGATCTTGATCGCTGCAATAAGGGTTCTTGTTTGCACCTAATGAAGACAGCGTACTCAGATGGCTTTGAAGAGGTTGCTATTTGTTCTATCCTGAAAGAGACTCTTAAAGCTTTGGAGTACCTTCATCGCCAGGGACACATACATCGGGATGTGAAGGCTGGAAATATACTACTTGATAGTAATGGGGCTGTGAAGCTTGCTGATTTTGGTGTTTCAGCTTGCATGTTTGAAACAGGCGATAGACAGCGCGCCAGAAATACCTTCACGGGAACCCCATGCTGGTAA 432 44.68 MGSMGGRQRTYSANSTDYKLLEEIGYGASATVFRAIYTPSNEVVAIKCLDLDRCNKGSCLHLMKTAYSDGFEEVAICSILKETLKALEYLHRQGHIHRDVKAGNILLDSNGAVKLADFGVSACMFETGDRQRARNTFTGTPCW 143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9085081 9087258 - CmoCh16G012740.1 Cmo16g01274 400309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01274 143 Gene3D Transferase(Phosphotransferase) domain 1 62 143 - -
Cmo16g01274 143 Gene3D Phosphorylase Kinase; domain 1 4 61 - -
Cmo16g01274 143 SUPERFAMILY Protein kinase-like (PK-like) 13 143 IPR011009 -
Cmo16g01274 143 SMART serkin_6 18 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g01274 143 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 6 56 - -
Cmo16g01274 143 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 56 143 - -
Cmo16g01274 143 ProSiteProfiles Protein kinase domain profile. 1 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g01274 143 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Cmo16g01274 143 Pfam Protein kinase domain 51 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g01274 143 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 6 56 - -
Cmo16g01274 143 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 56 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g01274 Cmo-Chr16:9085081 Cmo14g01826 Cmo-Chr14:13910049 5.53E-32 dispersed
Cmo16g01274 Cmo-Chr16:9085081 Cmo06g00592 Cmo-Chr6:2913131 4.34E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74983 PF00069 Pkinase 7.70E-19 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01274 - - csv:101213683 259.225