Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01275 ATGGGAGCTTTAACTACACGGGTTGAAGTTTCGTTCTTGACGGATCTTCAATCTGCTGGTTTTCCGGAACCTCGCTTCAATCCTGCCCTTCCTGTTCGACACTTCACCATGTCGCCGACTCCCGAGGAACCCAATAATTTGCAGAACGGAATCGAAATCGAACCACACATTTCGGTAGAATCAAATCAAATTGGTGAATCCAAATCAGAGCCGGAATCCACAGCAGATGTAGTTCCCACAGCTGAATTACAACAAGAACGCGAATTGGAATCAGTTAATGGAGTAGAAGACTTGGAGCCTCAATCGGAGCTGGTAATTCCCACAGCTGAATTACAACAAGAACGCGAATCGGAATCAGTCAATGGAGTAGCAGACTCGGAGCTTCAATCGGAGCTGGATTCTCCAAGGAAACAGTTATCGGAGTCCATCCAATTACAGGTAGCGACGGATGTTGCAGATCCGAGGTTTGAAGAGCCTAAAGGAACCTCGATCTCATCCAACGGCACTGAGAACTCGCAACCTGCGCTGCGTAAAGATGAAGGAAGCCGAACATTTACAATGAGAGAGTTGCTGAATGGATTGAAAGTTGAAGATGGTAACGACAGCCTTAACGAATCTGAAGGCGAGAAGCCGGAGGCGAACTCCGGTTACAGTCTTAATCAAGATAGTCCACATCAGCCTTATTCTGAACAGAGCAGAGCTGCCATGGAGTTGATCAACAGTGTTACAGGTGTTGATGAAGAGGGCCGTTCTCGCCAAAGGATTCTCACATTTGCTGCTAGGAGGTATGCGAGTGCAATTGAGAGAAATGGTCAAGATTATGATGCTCTATACAATTGGGCTTTGGTCCTCCAGGAGAGTGCAGACAATGTTAGTCCAGATTCCACTTCACCTTCTAAAGATGCGTTGCTTGAAGAGGCTTGTAAAAAGTACGATGAGGCTACCCGTCTTTGCCCAACACTTCATGATGCTTTTTATAATTGGGCTATTGCAATCTCTGATCGTGCCAAAATGCGTGGTCGTACAAAGGAGGCTGAAGAACTGTGGAAGCAGGCTACCAAAAATTATGAAAAAGCTGTCCAACTCAACTGGAATAGTCCCCAGGCACTAAATAATTGGGGGCTTGCTCTACAGGAACTCAGTGCGATTGTGCCAGCACGAGAAAAGCAGACAATTGTAAAAACAGCTATCAGTAAGTTCCGTGCTGCTATACAGTTGCAATTTGATTTTCATCGAGCAATCTACAACCTTGGTACTGTTCTGTATGGACTAGCTGAGGACACATTGCGGACTGGTGGCACAGGAACTGTTAAGGATGTTTCCCCTAATGAGTTGTACAGCCAATCTGCAATTTATATTGCAGCTGCGCATGCTCTAAAACCAAGTTACTCTGTTTACAGCAGTGCCTTGCGGTTGGTTCGTTCAATGCTGCCGTTACCCTATCTAAAAGTTGGATACCTGACTGCACCTCCGGTGGGGAGACCATTTGCTCCTCACGGTGATTGGAAACGTTCACAATTTTTTCTAAATCATGATGTATTGCAAAAGCTTAACATAGGCGGGGAACAAACACAAACATCCCCTACTCTTTTAGGAAGATCTGGAAGTACCTTGAATGGCGACAGGACAATGAAAGTAGAAATTCCAGATATTGTCTCTGTTTCAGCCTGTGCAGATCTAACTTTACCACCCGGTGCCGGGCTCTGCATCGACACAATCCATGGACAAATTTTCTTGGTTGCTGACTCGTGGGACGCGCTCGATGGATGGCTTGATGCAATTAGATTAGTTTACACGATCTATGCCCGAGGGAAGAACGAGGTTTTAGCTGGCATCATAGCAGGTTGA 1848 45.89 MGALTTRVEVSFLTDLQSAGFPEPRFNPALPVRHFTMSPTPEEPNNLQNGIEIEPHISVESNQIGESKSEPESTADVVPTAELQQERELESVNGVEDLEPQSELVIPTAELQQERESESVNGVADSELQSELDSPRKQLSESIQLQVATDVADPRFEEPKGTSISSNGTENSQPALRKDEGSRTFTMRELLNGLKVEDGNDSLNESEGEKPEANSGYSLNQDSPHQPYSEQSRAAMELINSVTGVDEEGRSRQRILTFAARRYASAIERNGQDYDALYNWALVLQESADNVSPDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVKTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTGTVKDVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKVGYLTAPPVGRPFAPHGDWKRSQFFLNHDVLQKLNIGGEQTQTSPTLLGRSGSTLNGDRTMKVEIPDIVSVSACADLTLPPGAGLCIDTIHGQIFLVADSWDALDGWLDAIRLVYTIYARGKNEVLAGIIAG 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9088882 9099739 - CmoCh16G012750.1 Cmo16g01275 400310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01275 615 Gene3D Tetratricopeptide repeat domain 365 479 IPR011990 GO:0005515
Cmo16g01275 615 Gene3D Tetratricopeptide repeat domain 245 364 IPR011990 GO:0005515
Cmo16g01275 615 MobiDBLite consensus disorder prediction 209 231 - -
Cmo16g01275 615 MobiDBLite consensus disorder prediction 61 80 - -
Cmo16g01275 615 PANTHER - 94 614 - -
Cmo16g01275 615 MobiDBLite consensus disorder prediction 106 147 - -
Cmo16g01275 615 PANTHER PROTEIN HLB1 94 614 - -
Cmo16g01275 615 SUPERFAMILY TPR-like 259 381 IPR011990 GO:0005515
Cmo16g01275 615 MobiDBLite consensus disorder prediction 61 231 - -
Cmo16g01275 615 MobiDBLite consensus disorder prediction 160 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01275 - - - cmax:111465172 1122.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00591 Cmo16g01275 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00487 Cmo-Chr3:5218465 Cmo16g01275 Cmo-Chr16:9088882 8.38E-08 transposed
Cmo16g01275 Cmo-Chr16:9088882 Cmo06g00591 Cmo-Chr6:2901368 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g233 . . . . . . . . Cmo06g00591 Cmo16g01275 . . . . . Cpe14g01015 . . . . . . . . Cla10g00086 Cam10g0085 Cec10g0089 Cco10g0091 Clacu10g0086 Cmu10g0933 Cre10g0347 Cone8ag0554 Cone12ag0553 . . Lsi07g01112 . . Cme06g02392 . . . . . . . Bma12g00254 . . . Cma06g00588 . Car06g00520 Car16g01157 Cpe08g00914 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009993 1 0 0 2 1 1 2 1 1 1 0 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g01275 Cmo_Chr16 FPKM 136.144867 142.526596 149.550446 162.438766 249.090546 251.210602 247.460693 219.115082 235.348007 207.732269