Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01276 ATGGCCGAATTGAAGAACCATGGCGTCTGCGGCGCAAAAAGATCGGCCTCCGATGAAACCGAGGCGATAAAATTCGATCCTAAGAAATCAACGGCCATGGTTCCGTCTCTCCTCGAGGATCCAGCGGCTGCGATTGCAAACACGCGTCACGAATTCGGTGAACACGGAGGGGTAAACATGTCCATTGAAGCCTCCGCCACATTCACCGTCATGGAACCGGAGACGATGCGGCGGATGTTCGCCGGAGAGCTTGGTCCCGACCGTGATTTCTATATTTACAGTCGTCATTTCAATCCGACGGTGTTGAATCTTAGCCGTCAGATGGCTGCCCTTGAAGGCACCGCTGCTGCCTACTGTACCTCCAGCGGAATGTCCGCCATCTGCGCCGTCCTCCTCCAACTCCTCGCCAGCGGGGACCATGTCGTGGCGTCTAGAACCCTCTACGGTGGGACCCACGCGTTGCTGGCTCACTTTCTCCCGAGGACTTCGAATATAACGACGTCGTTTGTGGACATAGGTGATTTGGAGGAGGTGGAGAAGGAAATTGTGGAAGGGAAAACGAAGGTGCTTTATTTTGAAGCGGTTTCGAATCCGACTTTGGCGGTGGCGAATATACCGGAACTGTGTCGGATTGGCCATGCAAAGGGTCTGACGGTGGTGGTGGATAACACTTTCACGCCGATGGTTCTGTCTCCGGCGAGGCTCGGTGCTGACGTGGTCGTCCACAGTATTTCCAAGTTCATCAGCGGTGGAGCTGACATCATTGCAGGTGCGGTATGTGGGCCTTCGAAGCTAGTGAACTCGATGATGGACCTACGACAGGGTAGCTTGATGCTTCTAGGGCCAACCATGAACGCAAAGGTGGCGTTCGAGCTCTCGGAGAGAATCCCTCACTTGAGCTTGAGAATGAAGGAGCATTGCAAAAGAGCAGCGGAGTTTGCAGAGAGAATGAAGAAGGCAGGGTTGAAAGTCATATACCCGGGGCTACCAGATCACCCACAGCACCAACTTATGAAGAGCTTGGTGAACTCAGAATACGGGTTTGGAGGAATGTTGTGCCTTGACATGGGAACTGAGGAAAAGGCGAACAAGCTCATGAATATACTCCAAAACACCACACAATTTGGGTTCATGGCGGTGAGTTTAGGGTACTATGAAACCCTAATGTCATGCTCGGGTAGTAGCACGAGTAGTGAAATGAGCCGAGAGGAAAAGGAACTCGCAGGAATCTCGCCCGGGCTCATAAGAATGTCTGTTGGATATATTGGCACATTGGACCAAAAATGGAGCCAGTTTGAGAAGGCTATAGCCAAAGTGGAAGCGAAGGAGCTTCCATTTTACCTTTTCCCACTTCCCTCTCGGATTCAAAGCTCCAGGCTCCCACGGTTAACATTCAGCCCTTGCTCCCCACCCGATTTTCTCCTCAACCTTCCTCGAACTAGAAGTGAAAAGAAGATAATGGATTCAGCTCAGAATGCATCTTCTGCTGCCGGAACTGGTGGAAGTGGTGGGAATGGATCAGTCATCAATGATACTTCAGCATCAACTACTGTGGATGATTCAAAGCAAAACTTGAACCAAGTAATCAATTCCATACAGAAAACTTTGGGTATCCTCCATCAGCTCAACCTCACCGTTTCTAACTTCAATGCTGCCTATCAGCTGCCTCTTTTACAACGCCTTAATTCTCTCGTTTTGGAGCTTGATAACATGGTTAAATTATCAGAGAAGTGCACCATCCAGGTCCCTATGGAGGTTGTTAACTTGATTGATGATGGGAAGAATCCAGATGAATTCACGAGGGATGTCTTAAATAGTTGCATTGCAAAAAATCAAAGTACAAAAGGCAAAACTGATGCCTTCAAGGGCTTACGGAAGCATCTTTTGGAGGAGCTTGAACAGACATTTCCTGATGAAGTTGAGTCTTATAGAGAAATTCGTGCTGCTTCTGCTGCCGAATCAAAAAGGATAGCGCAATCACAAAGTATGTTGCCAAACGGGGACATGAAGGTTAAGATGGAGATTTAA 2028 49.01 MAELKNHGVCGAKRSASDETEAIKFDPKKSTAMVPSLLEDPAAAIANTRHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFYIYSRHFNPTVLNLSRQMAALEGTAAAYCTSSGMSAICAVLLQLLASGDHVVASRTLYGGTHALLAHFLPRTSNITTSFVDIGDLEEVEKEIVEGKTKVLYFEAVSNPTLAVANIPELCRIGHAKGLTVVVDNTFTPMVLSPARLGADVVVHSISKFISGGADIIAGAVCGPSKLVNSMMDLRQGSLMLLGPTMNAKVAFELSERIPHLSLRMKEHCKRAAEFAERMKKAGLKVIYPGLPDHPQHQLMKSLVNSEYGFGGMLCLDMGTEEKANKLMNILQNTTQFGFMAVSLGYYETLMSCSGSSTSSEMSREEKELAGISPGLIRMSVGYIGTLDQKWSQFEKAIAKVEAKELPFYLFPLPSRIQSSRLPRLTFSPCSPPDFLLNLPRTRSEKKIMDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAESKRIAQSQSMLPNGDMKVKMEI 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9104712 9112378 + CmoCh16G012760.1 Cmo16g01276 400311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01276 675 SUPERFAMILY PLP-dependent transferases 52 427 IPR015424 -
Cmo16g01276 675 CDD CGS_like 56 437 IPR000277 GO:0019346|GO:0030170
Cmo16g01276 675 PANTHER METHIONINE GAMMA-LYASE-LIKE 1 439 - -
Cmo16g01276 675 Gene3D - 42 296 IPR015421 GO:0003824
Cmo16g01276 675 MobiDBLite consensus disorder prediction 486 518 - -
Cmo16g01276 675 Gene3D Aspartate Aminotransferase, domain 1 300 439 IPR015422 GO:0003824
Cmo16g01276 675 Pfam Cys/Met metabolism PLP-dependent enzyme 49 421 IPR000277 GO:0019346|GO:0030170
Cmo16g01276 675 MobiDBLite consensus disorder prediction 487 518 - -
Cmo16g01276 675 Pfam Transcription factor subunit Med10 of Mediator complex 531 644 IPR019145 GO:0003712|GO:0006357|GO:0016592
Cmo16g01276 675 PANTHER TRANS-SULFURATION ENZYME FAMILY MEMBER 1 439 IPR000277 GO:0019346|GO:0030170
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01276 K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] - csv:101214172 778.089
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00590 Cmo-Chr6:2895090 Cmo16g01276 Cmo-Chr16:9104712 0 transposed
Cmo07g01401 Cmo-Chr7:8024836 Cmo16g01276 Cmo-Chr16:9104712 1.90E-37 transposed
Cmo11g01235 Cmo-Chr11:7659069 Cmo16g01276 Cmo-Chr16:9104712 1.06E-22 transposed
Cmo14g00580 Cmo-Chr14:2954403 Cmo16g01276 Cmo-Chr16:9104712 1.51E-28 transposed
Cmo15g01379 Cmo-Chr15:9384785 Cmo16g01276 Cmo-Chr16:9104712 0 transposed
Cmo16g01276 Cmo-Chr16:9104712 Cmo06g00589 Cmo-Chr6:2892326 8.58E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g239 . . . . . . . . . Cmo16g01276 . . . . . Cpe14g01016 . . . . . . . . Cla10g00084 Cam10g0081 Cec10g0085 Cco10g0088 Clacu10g0083 Cmu10g0929 Cre10g0344 . Cone12ag0590 . . Lsi07g01110 . . Cme06g02390 . . . . . . . . . . . Cma06g00584 Cma16g01230 . Car16g01159 Cpe08g00915 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002860 2 1 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 2 0 2 2 2 2 3 0 2 2 1 2 0 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g01276 Cmo_Chr16 FPKM 6.816825 7.096091 12.101053 10.747772 8.584022 7.846166 7.24418 12.663349 13.319315 11.37626