Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01283 ATGGAAGGCCGCTTAACTTCCACTCTCACCGATCTTGCCGATGAGCCAACTCTGCAGCCCGATTTCATCCGCGACGAGGATGAGCGTTCCAAAGTCCCTTACAACCAGTTCAGCAATGAAGTCCCGATCATCTCCATCGCCGGAATCGACGACGTTGAAGGCGGCGGCAGGGCCGAGATCTGCCGGAAGATCGTTGACGCTTGCGAGGACTGGGGGATCTTCCAGATCGTCCACCATGGCGTGGATTCGGAAATTGTTTCCGATATGGCTCGTCTCGCTCGAGAGTTTTTTGCACTTCCGTCCGAGGAGAAGCTCCGTTACGATATGACTGGCGGTAAGAAGGGCGGATTTATCGTCTCCAGCCATCTCAAGGGAGAAGTTGTTAAAGATTGGCGTGAGATAGTGACCTACTTTTCGTACCCGATTAGAAACAGAGACTATTCCCTGTGGCCAGACAAGCCAGAGGGGTGGGCGGCGAAGACGGCGGAGTACAGCGAGAAGATGATGGGATTGGGGCGTAAGATGTTGGTGGTTTTATCAGAAGCCATGGGGCTGGAGAAGGAGGCCATAGCAAAGGCCTGTGTGGACATGGACCAGAAGATTGTGGTGAATTTCTATCCCAAATGCCCTCAGCCGGACCTCACTTTGGGGCTGAAGCGCCACACTGACCCTGGAACCATAACGCTGCTGCTGCAGGACCAGGTCGGTGGGCTTCAGGCCACCAAGGACGGTGGCCGGACGTGGATCACTGTCCAGCCCGTCCAAGGCGCTTTCATCGTCAACTTGGGAGACCATAGCCATCAGTATCTAAGCAATGGGAGGTTCAAGAATGCAGATCACAGAGCAGTAGTGAACTCGAACTCAAGCAGGCTATCAATAGCGACGTTTCAAAACCCTGCGCCGGAGGCTATTGTGTATCCATTGAAGATCAGAGAAGGGGAGAAGCCTGTTCTTGAGAACCCCATCACCTTCAGTGAGATGTATCAGACCAAGATGAGCAGGGACATTGAGCTTGCAAGGCTTAAAAAGCAGGCCCAACAGCAACAACAAGCCCAAAAGCTTGTTGGATAA 1071 53.22 MEGRLTSTLTDLADEPTLQPDFIRDEDERSKVPYNQFSNEVPIISIAGIDDVEGGGRAEICRKIVDACEDWGIFQIVHHGVDSEIVSDMARLAREFFALPSEEKLRYDMTGGKKGGFIVSSHLKGEVVKDWREIVTYFSYPIRNRDYSLWPDKPEGWAAKTAEYSEKMMGLGRKMLVVLSEAMGLEKEAIAKACVDMDQKIVVNFYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATKDGGRTWITVQPVQGAFIVNLGDHSHQYLSNGRFKNADHRAVVNSNSSRLSIATFQNPAPEAIVYPLKIREGEKPVLENPITFSEMYQTKMSRDIELARLKKQAQQQQQAQKLVG 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9150583 9153466 + CmoCh16G012830.1 Cmo16g01283 400318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01283 356 PANTHER NARINGENIN,2-OXOGLUTARATE 3-DIOXYGENASE 11 348 - -
Cmo16g01283 356 SUPERFAMILY Clavaminate synthase-like 14 334 - -
Cmo16g01283 356 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 194 299 IPR005123 -
Cmo16g01283 356 Gene3D - 8 338 IPR027443 -
Cmo16g01283 356 Pfam 2OG-Fe(II) oxygenase superfamily 199 298 IPR044861 -
Cmo16g01283 356 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 11 348 - -
Cmo16g01283 356 Pfam non-haem dioxygenase in morphine synthesis N-terminal 41 152 IPR026992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01283 K00475 F3H; naringenin 3-dioxygenase [EC:1.14.11.9] - ming:122073763 563.148
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo15g01395 Cmo16g01283 CCT
Cmo15g01395 Cmo16g01283 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g01283 Cmo-Chr16:9150583 Cmo16g00018 Cmo-Chr16:101453 4.75E-59 dispersed
Cmo16g01283 Cmo-Chr16:9150583 Cmo06g00583 Cmo-Chr6:2860753 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g274 . . Bda06g01126 . . . . . . Cmo16g01283 . Cma15g01333 . Car15g01198 . . . . . . . . . . . . . . . . . . . . . Lsi07g01105 . . . Blo03g00789 . . . . Bpe11g00380 . . . . Cmo15g01395 . Cma16g01237 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002095 5 1 3 3 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 1 1 3 3 1 3 5 1 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g01283 Cmo_Chr16 FPKM 12.762421 14.317976 15.526 15.923758 8.831639 7.647784 11.48351 21.588531 20.481726 21.528912