Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01286 ATGTTCATCTTTTGGTGTGGATGTTGGCTATACGTAGCTTACTTTAGAGGTTTTTTTCTTTTAATATTCCATGGTGGTTTCGCTCTTCAGGGGCAAATTTTATTGTTCACACGTGATGTGCTTTGTTGGGGTGAACTTACTGCTCTTGCCTTTGCTCTGAGGGGTAGTCACGCATCTTTTTTGGTTCTCGAGCCGGGACAGTCCAACGCCCTCACCATGCCCCCGTCGTGGTCTGGCCGGATTTGGGGTCGCACTTATTGCTCCCAAGACAATGCTGGTAGATTCTCCTGTGCCACTGCCGACTGCGGCTCGGGCACCGTCGAATGCAATGGTAGTGGCGCTGCCCCACCCGCTACCCTCGCTGAGTTCACGCTCAACGGTGCTGGTGGACTTGATTTCTATGATGTTAGCCTCGTCGATGGCTATAACGTACCCATGTTAATCACCCCACAAGCTAGCTCAGACGGAGGTAACTGCACGACGATCGGGTGTGCAGCAAATTTAAACACGGAGTGTCCAATGGAGCTAAGAGTGGCAGTGGATGGGCAGAGTGTGGCGTGCAAGAGCGCATGTGGGGCATTTGGTGAGCCGCAATATTGCTGCAATGGCGAATATGGGAGCCCAAGCACTTGTCGACCCACGTCTTACTCAGAGTTCTTCAAGTCGGCATGTCCGCAAGCTTATAGTTATGCCTATGATGATGGAACTAGCACCTTCACTTGCGCCGCCGCCAATTACCTCATCACTTTCTGTCCTTCTCTTTCAACTAGTGTGAAATCATCAAACGGGCAGTACCCTCGGGCAGTGGATGTCTCAAAAGCCGAGTATTCGGGCAGGCCGTTAGCGTCAGTGGCCGTTATATTCACCGTGACGGCAGCTCTAAGATCGGAAAACGACAGCGACAACGCATTTCTGAGCTACAGTTTTGAAGCGATGGAGTGGAACCCACTTTGTTCCTTGGCTTTGGAACAACTAATATGA 981 51.07 MFIFWCGCWLYVAYFRGFFLLIFHGGFALQGQILLFTRDVLCWGELTALAFALRGSHASFLVLEPGQSNALTMPPSWSGRIWGRTYCSQDNAGRFSCATADCGSGTVECNGSGAAPPATLAEFTLNGAGGLDFYDVSLVDGYNVPMLITPQASSDGGNCTTIGCAANLNTECPMELRVAVDGQSVACKSACGAFGEPQYCCNGEYGSPSTCRPTSYSEFFKSACPQAYSYAYDDGTSTFTCAAANYLITFCPSLSTSVKSSNGQYPRAVDVSKAEYSGRPLASVAVIFTVTAALRSENDSDNAFLSYSFEAMEWNPLCSLALEQLI 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9159750 9165766 + CmoCh16G012860.1 Cmo16g01286 400321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01286 326 PANTHER OS03G0233200 PROTEIN 62 271 IPR001938 -
Cmo16g01286 326 PRINTS Pathogenesis-related protein signature 242 251 IPR001938 -
Cmo16g01286 326 PRINTS Pathogenesis-related protein signature 80 91 IPR001938 -
Cmo16g01286 326 PRINTS Pathogenesis-related protein signature 132 148 IPR001938 -
Cmo16g01286 326 SUPERFAMILY Osmotin, thaumatin-like protein 59 253 IPR037176 -
Cmo16g01286 326 SMART tha2 49 252 IPR001938 -
Cmo16g01286 326 Gene3D Thaumatin 50 252 IPR037176 -
Cmo16g01286 326 CDD TLP-PA 63 251 - -
Cmo16g01286 326 Pfam Thaumatin family 62 252 IPR001938 -
Cmo16g01286 326 ProSitePatterns Thaumatin family signature. 93 109 IPR017949 -
Cmo16g01286 326 ProSiteProfiles Thaumatin family profile. 63 252 IPR001938 -
Cmo16g01286 326 PANTHER OS09G0536300 PROTEIN 62 271 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g01286 Cmo-Chr16:9159750 Cmo09g00095 Cmo-Chr9:456782 7.98E-94 dispersed
Cmo01g02036 Cmo-Chr1:14274908 Cmo16g01286 Cmo-Chr16:9159750 4.53E-88 wgd
Cmo16g01286 Cmo-Chr16:9159750 Cmo03g00705 Cmo-Chr3:6122594 7.89E-78 wgd
Cmo16g01286 Cmo-Chr16:9159750 Cmo06g00580 Cmo-Chr6:2844785 2.47E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01286 - - csv:101216818 406.757