Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01290 ATGGCAGAAGAGGATACCCCCTCTGAACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCTCTCACCTCTACAATGTCCACTCCATTGCGGAAGGTGTTCTGTAGAATTTCAGGTCTTGCAACTTCTCTGAGAAGAAACACAGCCCCTCACAGCCGAAGAATCTTTCACAGAGATGTTGAACAACAAGAGTTTCAATATGCAAGCTCTCATTGCCTTTCTTCTTATTACAGTGTCTTTGTTGCTCGCCTTGCTATAATGGTGATGCTAGCTATTTTGATTGGGATGCTGACAATACTCACATGGCACTTCACAAAGAGCTACACGGCACAGTCGCTCGATAGCTTAGCGTATGGTCTTCGACATGAACTGCTGCAGCGCCCGATCTTACGGATGTGGAGTGTCTTGAATTCCACAGCTGAAATAACCACAGCTCAGGTTAAGCTTTCAGAATATCTGTATGAAGCAATGAGAGACGTTACGTGGGCGATGTTTGCGAGTCGAAAAGCTCTTAATGCCATAACGATCAATTACAAGAATGGTTTTGTCCAAGCGTTCCATCGAGATCATAGAAGCAACAATACGTTTTATATTTACTCGGATCTTGCAAACTATTCCATCACTGCCACTCAATCATATAATATAAATCGACTTTCGTCGGGTGAAGGGTGGTCGGAACCACCCATACATGGCAATGTTTCTGCCAAATGGTACCGGGAACCGCTTGATCCGATTAGTGGTGAGAAGATGGGGAAAGCAAGACAAATCCCACCGGAGGACTTGATTAACATTCCTGGCATTTCACAGGTAGCTGATGGTGTTGCGTCATGGCATGTTACTGTCAGCAAGTACATGGATACACCATTGCTTTCAGCAGCCCTGCCTGTTTCGGATGCTTCAAATGAAAGCATAGTTGCGGTGGTCGGTGTCACGACCGCACTTTCGAGCGTCGGTCAACTTATGAAGGAGCTTGTTGAGTTCCATAGTGGACATATTTATCTAACCTCTCAAGAGGGCTACTTGCTTGCTACTTCAGCCAATGCTCCCTTGTTAAGAAATACATCGACGGGTCGGAAGCTTATGATGGCTGTCGATTCCCAAGATGACGTGATTCGATTAGGAGCCGAATGGTTAAACAAAACCTATGGAAATAACTTTCCTCCTGGTCATGAGGTCCATGAAGAGAACGTCAAGCTTGGTGGTCAGCAGTACTACATCGACTCGTTTTTTCTTAATCTAAAGAAGCTTCCCATTGTGGGGGTTGTCATCATTCCTAGGCAATACATAATGGGAAAGGTAGATGAGAGAGCTTACAAAACATTGGTTATACTCATTTCTGCCTCTTTGTGCATCTTAGTTGTTGGATGTCTATTCATTTTGATTCTGACAAAAGGAGTATCTAAGGAAATGAAACTAAGAGCTGAACTAATAAGCCATCTTGATGCAAGAAGAAGAGCAGAGGCATCTAGTAATTACAAGAGTCAGTTTCTAGCGAATATGAGTCATGAGCTGAGGACACCGATGGCTGCGGTAATTGGACTGCTCGACATTCTAATGTGCGATGACTGTCTCAATAACGAACAGTTTGCGACAGTCACTCAGATTCGAAAATGCTCAACAGCTCTACTCCGACTTCTTAACAACATTCTAGATCTAAGCAAGGTTGAATCTGGAAAGCTAGTTTTGGAAGATGCAGAGTTTGATCTGGGACGAGAACTCGAAGGGCTTGTTGATATGTTTTCCGTGCAATGCATTGATCATAATGTGGAAACTGTATTGGATCTCTCTGATGATATGCCGAGATTAGTTCGAGGAGACTCCGGTCGGGTTGTTCAAATATTCACGAACTTGATTAGCAACTCTATCAAATTCACTACTACTGGTCACATCATTCTTCGAGGGTGGTGCGAGACGTCGAATACGCTCAAAGAAATGGGAAAGTCTTGTATGGATCAGAAGAAATCACGGTTTCCTAATCGGACAAAGATGAAACAACACGGAGACCACATGAAGAACGCGTTCAAGAAAGATAACAAAATGACCTTATGGTTTGAACTTGATGACACTGGCTGTGGGATCGATCCTAGCAAATGGGAGTCTGTTTTTGAAAGCTTTGAGCAAGCAGATCCCTCGACAACCCGAACGCACGGTGGCACGGGTCTTGGACTATGCATCGTTCGTACCTTGGTTAACAAGATGGGCGGTGAAATCAAGGTTGTAAAGAAAAACGGCCCGGGAACGCTAATGAGACTTTATTTGGTTCTCAGCACACCTGTAGACTCCATAGATCATCACTCTCAGTTTGATTTCGCAAAACATAATGCAGTGGTACTTCTTGCACTCCGTGGCAGCACGAGTCGATTAATCACGTCGCAGTGGCTTCGTAAGATCGGACTGTTCACTTTAGAGGCTTCAGAATGGAATGAACTAACTCTAATCCTTCAAGAACTCTTTCAAGCGAGAAAGTTTGAAAACAAAAAGGGATTTAGTCCACAGGATTCCCTCGGTGAACCATTACGAGCCGAGTTAACGAGAATTAAGGACATGAAAAGCCAAATGTTCATCGTCGTTGCCGATATCGGGATACTGGACTTGAGCACAGATATTTGGAAGGATCAACTTTACTTCCTTGACAAGTACTCTGGAAAAGTGAAGTTTGCGTGGATGTTAAACCACGATACGTCCAACGCCATGAAGACAGAGCTTCGGGGAAAAGGACACTTTATAGTGAACAATAAGCCGCTGTATAGGGCAAAAATGATTCATATTTTGGAAGCTGTTATGAAGGACAGAAATCTTGAGATTCAGAGGAAAAATGGTTTAAGAAATGCATCAAAAGAAGGGGATTTTCATGAATGCCTTGAAATTGATTCAACTCAGTTTGAAACTGCTAGCTCTGATGATTCTGATTTAGCTGAACTTGACAAGTCCAAGTCTCAGTGTGCAACATTTCAAGAAGAAACAATGCCAAAACCTTGTCAGCCGCCATTTTTGTCCCTTAACGATAGCTTAGTTGAGTTAACTCATGTACGTTCGACTGCGAGTAACGCAAGGACCGGTGGTTCATGTGACATGAGACAAGACTCATCCAATGGACTGAACTTAGGAGGAAACTATCCTAAAAGCCAAGAAGAATCAGATTCTAAGAATGTTCACGGTAAGAAATCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCGGTTCTTCAAAGAGTAACGACGATAATGCTCGAAAGAATGGGAGCCACGGTGATCCCTGTCGGAGATGGGCTGCTGGCTGTTGAAGCTCTGACTGCAATGCTTAGTGCTGAAGAGCAAAGAAGAGAATGCCCCACGAGATATGATTTGGTCTTGATGGATTGCCAAATGCCAAAGATGGACGGCTACGAAGCAACAAAAGCGATTAGAAAGCTAGAATTAGGAACGAGCCTTCATGTACCGATCGTAGCATTGACAGCCCACGCAATGTCGTCAGATGAAGCCAAATGCTTGGAGGTAGGAATGGATGCATACCTAACAAAGCCAATTGACTATAAGCTGATGGTATCCACCATACTCTCCCTCACTCAGAGAAAAGTCTAA 3591 43.64 MAEEDTPSEPSSSSSSSSSSSALTSTMSTPLRKVFCRISGLATSLRRNTAPHSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGMLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWSVLNSTAEITTAQVKLSEYLYEAMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSITATQSYNINRLSSGEGWSEPPIHGNVSAKWYREPLDPISGEKMGKARQIPPEDLINIPGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALSSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSTGRKLMMAVDSQDDVIRLGAEWLNKTYGNNFPPGHEVHEENVKLGGQQYYIDSFFLNLKKLPIVGVVIIPRQYIMGKVDERAYKTLVILISASLCILVVGCLFILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCIDHNVETVLDLSDDMPRLVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNTLKEMGKSCMDQKKSRFPNRTKMKQHGDHMKNAFKKDNKMTLWFELDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRLYLVLSTPVDSIDHHSQFDFAKHNAVVLLALRGSTSRLITSQWLRKIGLFTLEASEWNELTLILQELFQARKFENKKGFSPQDSLGEPLRAELTRIKDMKSQMFIVVADIGILDLSTDIWKDQLYFLDKYSGKVKFAWMLNHDTSNAMKTELRGKGHFIVNNKPLYRAKMIHILEAVMKDRNLEIQRKNGLRNASKEGDFHECLEIDSTQFETASSDDSDLAELDKSKSQCATFQEETMPKPCQPPFLSLNDSLVELTHVRSTASNARTGGSCDMRQDSSNGLNLGGNYPKSQEESDSKNVHGKKSLEGLRILLAEDTPVLQRVTTIMLERMGATVIPVGDGLLAVEALTAMLSAEEQRRECPTRYDLVLMDCQMPKMDGYEATKAIRKLELGTSLHVPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTQRKV 1196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9191549 9197334 + CmoCh16G012900.1 Cmo16g01290 400325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01290 1196 PRINTS Bacterial sensor protein C-terminal signature 683 697 IPR004358 GO:0016310|GO:0016772
Cmo16g01290 1196 PRINTS Bacterial sensor protein C-terminal signature 701 711 IPR004358 GO:0016310|GO:0016772
Cmo16g01290 1196 PRINTS Bacterial sensor protein C-terminal signature 718 736 IPR004358 GO:0016310|GO:0016772
Cmo16g01290 1196 PANTHER TWO-COMPONENT HISTIDINE KINASE 27 1193 - -
Cmo16g01290 1196 ProSiteProfiles Response regulatory domain profile. 1062 1192 IPR001789 GO:0000160
Cmo16g01290 1196 Gene3D - 561 759 IPR036890 -
Cmo16g01290 1196 SUPERFAMILY CheY-like 1059 1194 IPR011006 -
Cmo16g01290 1196 Pfam Response regulator receiver domain 1063 1186 IPR001789 GO:0000160
Cmo16g01290 1196 PANTHER OSMOSENSOR HISTIDINE KINASE 27 1193 - -
Cmo16g01290 1196 SMART HisKA_10 493 559 IPR003661 GO:0000155|GO:0007165
Cmo16g01290 1196 MobiDBLite consensus disorder prediction 1 25 - -
Cmo16g01290 1196 Pfam His Kinase A (phospho-acceptor) domain 494 559 IPR003661 GO:0000155|GO:0007165
Cmo16g01290 1196 Gene3D - 1039 1194 - -
Cmo16g01290 1196 SMART REC_2 1061 1188 IPR001789 GO:0000160
Cmo16g01290 1196 CDD REC_hyHK_CKI1_RcsC-like 1063 1188 - -
Cmo16g01290 1196 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 606 756 IPR003594 -
Cmo16g01290 1196 MobiDBLite consensus disorder prediction 1016 1053 - -
Cmo16g01290 1196 CDD HisKA 494 555 IPR003661 GO:0000155|GO:0007165
Cmo16g01290 1196 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 481 560 IPR036097 GO:0000155|GO:0007165
Cmo16g01290 1196 MobiDBLite consensus disorder prediction 1016 1045 - -
Cmo16g01290 1196 SMART HKATPase_4 606 758 IPR003594 -
Cmo16g01290 1196 Gene3D - 481 560 - -
Cmo16g01290 1196 ProSiteProfiles Histidine kinase domain profile. 500 758 IPR005467 -
Cmo16g01290 1196 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 548 754 IPR036890 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01033 Cmo-Chr12:9642552 Cmo16g01290 Cmo-Chr16:9191549 3.71E-25 dispersed
Cmo16g01290 Cmo-Chr16:9191549 Cmo20g00674 Cmo-Chr20:3286073 1.71E-15 dispersed
Cmo16g01290 Cmo-Chr16:9191549 Cmo06g00111 Cmo-Chr6:629770 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11345 PF02518 HATPase_c 6.60E-23 CL0025 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01290 - - csv:101217761 2110.11