Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01290 ATGGCAGAAGAGGATACCCCCTCTGAACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCTCTCACCTCTACAATGTCCACTCCATTGCGGAAGGTGTTCTGTAGAATTTCAGGTCTTGCAACTTCTCTGAGAAGAAACACAGCCCCTCACAGCCGAAGAATCTTTCACAGAGATGTTGAACAACAAGAGTTTCAATATGCAAGCTCTCATTGCCTTTCTTCTTATTACAGTGTCTTTGTTGCTCGCCTTGCTATAATGGTGATGCTAGCTATTTTGATTGGGATGCTGACAATACTCACATGGCACTTCACAAAGAGCTACACGGCACAGTCGCTCGATAGCTTAGCGTATGGTCTTCGACATGAACTGCTGCAGCGCCCGATCTTACGGATGTGGAGTGTCTTGAATTCCACAGCTGAAATAACCACAGCTCAGGTTAAGCTTTCAGAATATCTGTATGAAGCAATGAGAGACGTTACGTGGGCGATGTTTGCGAGTCGAAAAGCTCTTAATGCCATAACGATCAATTACAAGAATGGTTTTGTCCAAGCGTTCCATCGAGATCATAGAAGCAACAATACGTTTTATATTTACTCGGATCTTGCAAACTATTCCATCACTGCCACTCAATCATATAATATAAATCGACTTTCGTCGGGTGAAGGGTGGTCGGAACCACCCATACATGGCAATGTTTCTGCCAAATGGTACCGGGAACCGCTTGATCCGATTAGTGGTGAGAAGATGGGGAAAGCAAGACAAATCCCACCGGAGGACTTGATTAACATTCCTGGCATTTCACAGGTAGCTGATGGTGTTGCGTCATGGCATGTTACTGTCAGCAAGTACATGGATACACCATTGCTTTCAGCAGCCCTGCCTGTTTCGGATGCTTCAAATGAAAGCATAGTTGCGGTGGTCGGTGTCACGACCGCACTTTCGAGCGTCGGTCAACTTATGAAGGAGCTTGTTGAGTTCCATAGTGGACATATTTATCTAACCTCTCAAGAGGGCTACTTGCTTGCTACTTCAGCCAATGCTCCCTTGTTAAGAAATACATCGACGGGTCGGAAGCTTATGATGGCTGTCGATTCCCAAGATGACGTGATTCGATTAGGAGCCGAATGGTTAAACAAAACCTATGGAAATAACTTTCCTCCTGGTCATGAGGTCCATGAAGAGAACGTCAAGCTTGGTGGTCAGCAGTACTACATCGACTCGTTTTTTCTTAATCTAAAGAAGCTTCCCATTGTGGGGGTTGTCATCATTCCTAGGCAATACATAATGGGAAAGGTAGATGAGAGAGCTTACAAAACATTGGTTATACTCATTTCTGCCTCTTTGTGCATCTTAGTTGTTGGATGTCTATTCATTTTGATTCTGACAAAAGGAGTATCTAAGGAAATGAAACTAAGAGCTGAACTAATAAGCCATCTTGATGCAAGAAGAAGAGCAGAGGCATCTAGTAATTACAAGAGTCAGTTTCTAGCGAATATGAGTCATGAGCTGAGGACACCGATGGCTGCGGTAATTGGACTGCTCGACATTCTAATGTGCGATGACTGTCTCAATAACGAACAGTTTGCGACAGTCACTCAGATTCGAAAATGCTCAACAGCTCTACTCCGACTTCTTAACAACATTCTAGATCTAAGCAAGGTTGAATCTGGAAAGCTAGTTTTGGAAGATGCAGAGTTTGATCTGGGACGAGAACTCGAAGGGCTTGTTGATATGTTTTCCGTGCAATGCATTGATCATAATGTGGAAACTGTATTGGATCTCTCTGATGATATGCCGAGATTAGTTCGAGGAGACTCCGGTCGGGTTGTTCAAATATTCACGAACTTGATTAGCAACTCTATCAAATTCACTACTACTGGTCACATCATTCTTCGAGGGTGGTGCGAGACGTCGAATACGCTCAAAGAAATGGGAAAGTCTTGTATGGATCAGAAGAAATCACGGTTTCCTAATCGGACAAAGATGAAACAACACGGAGACCACATGAAGAACGCGTTCAAGAAAGATAACAAAATGACCTTATGGTTTGAACTTGATGACACTGGCTGTGGGATCGATCCTAGCAAATGGGAGTCTGTTTTTGAAAGCTTTGAGCAAGCAGATCCCTCGACAACCCGAACGCACGGTGGCACGGGTCTTGGACTATGCATCGTTCGTACCTTGGTTAACAAGATGGGCGGTGAAATCAAGGTTGTAAAGAAAAACGGCCCGGGAACGCTAATGAGACTTTATTTGGTTCTCAGCACACCTGTAGACTCCATAGATCATCACTCTCAGTTTGATTTCGCAAAACATAATGCAGTGGTACTTCTTGCACTCCGTGGCAGCACGAGTCGATTAATCACGTCGCAGTGGCTTCGTAAGATCGGACTGTTCACTTTAGAGGCTTCAGAATGGAATGAACTAACTCTAATCCTTCAAGAACTCTTTCAAGCGAGAAAGTTTGAAAACAAAAAGGGATTTAGTCCACAGGATTCCCTCGGTGAACCATTACGAGCCGAGTTAACGAGAATTAAGGACATGAAAAGCCAAATGTTCATCGTCGTTGCCGATATCGGGATACTGGACTTGAGCACAGATATTTGGAAGGATCAACTTTACTTCCTTGACAAGTACTCTGGAAAAGTGAAGTTTGCGTGGATGTTAAACCACGATACGTCCAACGCCATGAAGACAGAGCTTCGGGGAAAAGGACACTTTATAGTGAACAATAAGCCGCTGTATAGGGCAAAAATGATTCATATTTTGGAAGCTGTTATGAAGGACAGAAATCTTGAGATTCAGAGGAAAAATGGTTTAAGAAATGCATCAAAAGAAGGGGATTTTCATGAATGCCTTGAAATTGATTCAACTCAGTTTGAAACTGCTAGCTCTGATGATTCTGATTTAGCTGAACTTGACAAGTCCAAGTCTCAGTGTGCAACATTTCAAGAAGAAACAATGCCAAAACCTTGTCAGCCGCCATTTTTGTCCCTTAACGATAGCTTAGTTGAGTTAACTCATGTACGTTCGACTGCGAGTAACGCAAGGACCGGTGGTTCATGTGACATGAGACAAGACTCATCCAATGGACTGAACTTAGGAGGAAACTATCCTAAAAGCCAAGAAGAATCAGATTCTAAGAATGTTCACGGTAAGAAATCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCGGTTCTTCAAAGAGTAACGACGATAATGCTCGAAAGAATGGGAGCCACGGTGATCCCTGTCGGAGATGGGCTGCTGGCTGTTGAAGCTCTGACTGCAATGCTTAGTGCTGAAGAGCAAAGAAGAGAATGCCCCACGAGATATGATTTGGTCTTGATGGATTGCCAAATGCCAAAGATGGACGGCTACGAAGCAACAAAAGCGATTAGAAAGCTAGAATTAGGAACGAGCCTTCATGTACCGATCGTAGCATTGACAGCCCACGCAATGTCGTCAGATGAAGCCAAATGCTTGGAGGTAGGAATGGATGCATACCTAACAAAGCCAATTGACTATAAGCTGATGGTATCCACCATACTCTCCCTCACTCAGAGAAAAGTCTAA 3591 43.64 MAEEDTPSEPSSSSSSSSSSSALTSTMSTPLRKVFCRISGLATSLRRNTAPHSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGMLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWSVLNSTAEITTAQVKLSEYLYEAMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSITATQSYNINRLSSGEGWSEPPIHGNVSAKWYREPLDPISGEKMGKARQIPPEDLINIPGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALSSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSTGRKLMMAVDSQDDVIRLGAEWLNKTYGNNFPPGHEVHEENVKLGGQQYYIDSFFLNLKKLPIVGVVIIPRQYIMGKVDERAYKTLVILISASLCILVVGCLFILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCIDHNVETVLDLSDDMPRLVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNTLKEMGKSCMDQKKSRFPNRTKMKQHGDHMKNAFKKDNKMTLWFELDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRLYLVLSTPVDSIDHHSQFDFAKHNAVVLLALRGSTSRLITSQWLRKIGLFTLEASEWNELTLILQELFQARKFENKKGFSPQDSLGEPLRAELTRIKDMKSQMFIVVADIGILDLSTDIWKDQLYFLDKYSGKVKFAWMLNHDTSNAMKTELRGKGHFIVNNKPLYRAKMIHILEAVMKDRNLEIQRKNGLRNASKEGDFHECLEIDSTQFETASSDDSDLAELDKSKSQCATFQEETMPKPCQPPFLSLNDSLVELTHVRSTASNARTGGSCDMRQDSSNGLNLGGNYPKSQEESDSKNVHGKKSLEGLRILLAEDTPVLQRVTTIMLERMGATVIPVGDGLLAVEALTAMLSAEEQRRECPTRYDLVLMDCQMPKMDGYEATKAIRKLELGTSLHVPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTQRKV 1196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9191549 9197334 + CmoCh16G012900.1 Cmo16g01290 400325

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01290 1196 PRINTS Bacterial sensor protein C-terminal signature 683 697 IPR004358 GO:0016310|GO:0016772
Cmo16g01290 1196 PRINTS Bacterial sensor protein C-terminal signature 701 711 IPR004358 GO:0016310|GO:0016772
Cmo16g01290 1196 PRINTS Bacterial sensor protein C-terminal signature 718 736 IPR004358 GO:0016310|GO:0016772
Cmo16g01290 1196 PANTHER TWO-COMPONENT HISTIDINE KINASE 27 1193 - -
Cmo16g01290 1196 ProSiteProfiles Response regulatory domain profile. 1062 1192 IPR001789 GO:0000160
Cmo16g01290 1196 Gene3D - 561 759 IPR036890 -
Cmo16g01290 1196 SUPERFAMILY CheY-like 1059 1194 IPR011006 -
Cmo16g01290 1196 Pfam Response regulator receiver domain 1063 1186 IPR001789 GO:0000160
Cmo16g01290 1196 PANTHER OSMOSENSOR HISTIDINE KINASE 27 1193 - -
Cmo16g01290 1196 SMART HisKA_10 493 559 IPR003661 GO:0000155|GO:0007165
Cmo16g01290 1196 MobiDBLite consensus disorder prediction 1 25 - -
Cmo16g01290 1196 Pfam His Kinase A (phospho-acceptor) domain 494 559 IPR003661 GO:0000155|GO:0007165
Cmo16g01290 1196 Gene3D - 1039 1194 - -
Cmo16g01290 1196 SMART REC_2 1061 1188 IPR001789 GO:0000160
Cmo16g01290 1196 CDD REC_hyHK_CKI1_RcsC-like 1063 1188 - -
Cmo16g01290 1196 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 606 756 IPR003594 -
Cmo16g01290 1196 MobiDBLite consensus disorder prediction 1016 1053 - -
Cmo16g01290 1196 CDD HisKA 494 555 IPR003661 GO:0000155|GO:0007165
Cmo16g01290 1196 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 481 560 IPR036097 GO:0000155|GO:0007165
Cmo16g01290 1196 MobiDBLite consensus disorder prediction 1016 1045 - -
Cmo16g01290 1196 SMART HKATPase_4 606 758 IPR003594 -
Cmo16g01290 1196 Gene3D - 481 560 - -
Cmo16g01290 1196 ProSiteProfiles Histidine kinase domain profile. 500 758 IPR005467 -
Cmo16g01290 1196 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 548 754 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01290 - - - csv:101217761 2110.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01033 Cmo-Chr12:9642552 Cmo16g01290 Cmo-Chr16:9191549 3.71E-25 dispersed
Cmo16g01290 Cmo-Chr16:9191549 Cmo20g00674 Cmo-Chr20:3286073 1.71E-15 dispersed
Cmo16g01290 Cmo-Chr16:9191549 Cmo06g00111 Cmo-Chr6:629770 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo16g01290 . 31 1193 Histidine Kinase Gene Family AT2G17820 65.0 0.0e+00 1438.7
Cmo06g00111 . 515 1725 Histidine Kinase Gene Family AT2G17820 63.1 0.0e+00 1428.3
Cmo04g00017 . 53 1033 Histidine Kinase Gene Family AT2G01830 70.5 0.0e+00 1321.6
Cmo04g02235 CST 23 1023 Histidine Kinase Gene Family AT2G01830 69.3 0.0e+00 1304.7
Cmo15g00925 CST 155 1182 Histidine Kinase Gene Family AT2G01830 67.1 0.0e+00 1268.4
Cmo11g01837 . 279 1229 Histidine Kinase Gene Family AT2G01830 53.2 2.1e-273 939.5
Cmo20g00674 . 297 1240 Histidine Kinase Gene Family AT2G01830 53.5 8.1e-273 937.6
Cmo08g00183 . 51 984 Histidine Kinase Gene Family AT2G01830 52.3 1.3e-265 913.7
Cmo02g00226 . 283 1214 Histidine Kinase Gene Family AT2G01830 51.2 8.2e-257 884.4
Cmo17g01385 . 58 980 Histidine Kinase Gene Family AT2G01830 50.7 6.9e-256 881.3
Cmo01g01734 CST 1 999 Histidine Kinase Gene Family AT5G10720 57.1 2.2e-290 995.7
Cmo09g00388 CST 1 996 Histidine Kinase Gene Family AT5G10720 56.5 4.1e-289 991.5
Cmo05g00967 . 1 1120 Histidine Kinase Gene Family AT1G09570 79.4 0.0e+00 1817.7
Cmo12g00639 . 23 1087 Histidine Kinase Gene Family AT1G09570 69.9 0.0e+00 1566.2
Cmo19g00869 . 18 1111 Histidine Kinase Gene Family AT1G09570 54.4 0.0e+00 1205.7
Cmo14g01619 CST 35 1120 Histidine Kinase Gene Family AT1G09570 54.4 0.0e+00 1195.6
Cmo06g01560 CST 29 1109 Histidine Kinase Gene Family AT1G09570 52.0 0.0e+00 1137.1
Cmo14g01619 CST 13 1061 Histidine Kinase Gene Family AT2G18790 79.1 0.0e+00 1670.6
Cmo06g01560 CST 28 1050 Histidine Kinase Gene Family AT2G18790 76.7 0.0e+00 1585.5
Cmo18g00427 . 31 1051 Histidine Kinase Gene Family AT2G18790 59.3 0.0e+00 1226.1
Cmo13g00596 . 31 1050 Histidine Kinase Gene Family AT2G18790 59.5 0.0e+00 1226.1
Cmo05g00967 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.3 0.0e+00 1086.2
Cmo19g00869 . 26 1068 Histidine Kinase Gene Family AT2G18790 52.1 0.0e+00 1075.8
Cmo19g00869 . 12 1115 Histidine Kinase Gene Family AT5G35840 61.1 0.0e+00 1368.2
Cmo14g01619 CST 21 1122 Histidine Kinase Gene Family AT5G35840 52.7 0.0e+00 1147.5
Cmo05g00967 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1110.5
Cmo06g01560 CST 29 1111 Histidine Kinase Gene Family AT5G35840 51.3 0.0e+00 1100.5
Cmo14g01619 CST 30 1122 Histidine Kinase Gene Family AT4G16250 77.2 0.0e+00 1710.3
Cmo06g01560 CST 32 1111 Histidine Kinase Gene Family AT4G16250 73.4 0.0e+00 1619.8
Cmo18g00427 . 38 1113 Histidine Kinase Gene Family AT4G16250 57.3 0.0e+00 1256.5
Cmo13g00596 . 32 1092 Histidine Kinase Gene Family AT4G16250 57.9 0.0e+00 1245.3
Cmo05g00967 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.8 0.0e+00 1131.7
Cmo19g00869 . 26 1114 Histidine Kinase Gene Family AT4G16250 52.0 0.0e+00 1107.4
Cmo18g00427 . 15 1130 Histidine Kinase Gene Family AT4G18130 61.2 0.0e+00 1349.7
Cmo13g00596 . 15 1092 Histidine Kinase Gene Family AT4G18130 63.4 0.0e+00 1345.1
Cmo14g01619 CST 38 1120 Histidine Kinase Gene Family AT4G18130 59.0 0.0e+00 1275.4
Cmo06g01560 CST 40 1109 Histidine Kinase Gene Family AT4G18130 56.7 0.0e+00 1231.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11345 PF02518 HATPase_c 6.60E-23 CL0025 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g01290 Cmo_Chr16 FPKM 31.087538 35.324486 23.717833 24.481924 30.926817 23.775253 30.653503 24.671692 24.46266 29.942034