Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01301 ATGTTATCAAGCTTGATGAACTTGCTGAGGGCTTGCTGGCAGCCATGTGCCGCTCGTCACTTGCGTCGTCGGGGTGGCGGTGGTGGTTCGGATTCGGTTGGCTGCCAAGATGGGCTACTTTGGTACAAGGACCATGGGCACCACATCAATGGAGAATTTTCAATGGCTGTTGTTCAAGCCAACAATTTACTTGAGGATCAGAGCCAGCTTGAGTCTGGTCCTTTGAGCTTGCTTGAGTCTGGACCCTATGGAACCTTTGTAGGAATATACGACGGTCATGGTGGCCCCGAGACGTCGCGGTTCATATGTGATAACTTGTTCCAGCATCTCAAAGTGTTTGCTACTGAAGAAAAGGCAATGTCTGTAAATGTGATAAAGAAAGCATTCCAAGCAACAGAAGAGGGGTTTCTCTCTATTGTCACCAAGCAATGGCCCATGAACCCGCAGATTGCGGCCGTTGGTTCGTGCTGTCTGGTTGCTGTGATTTGTAATGGGAAACTCTACGTTGCGAATCTTGGTGACTCCCGAGCTGTGTTGGGGAGGCTTGTTCGGTCGACGGGGGAAGTTCTTCCTATTCAGCTGTCGTCGGAGCACAATGTAAGCATACAATCAGTCCGCCAGGAGATGCAGTCTATGCACCCAGATGACTCCCAGATAGTAGTGTTGAAGCATAACGTATGGCGCGTAAAGGGCTTGATTCAGATTTCTCGGTCGATTGGAGATGTATATCTCAAAAAGCCAGAGTTTAATCGGGAGCCTTTGTATACTAAGTTTCGTCTCCGGGAGCCCTTCAGTAAGCCTATTCTGAGCTCAGAACCTGCGGTCTCTGTGCATGAACTCGATCCAGACGATCAATTTCTCATATTTGCCTCTGATGGGCTGTGGGAGCACCTAAGCAACCAGGATGCAGTTGATATAGTTCACAAGCATCCTCACAGTGGAAGTGCAAGGAGGCTGGTGAAAGCGGCAATGCAGGAAGCAGCTAAGAAACGAGAAATGCGATACTCAGACTTGAAGAAGATCGATCGTGGGGTTCGGCGTCATTTTCACGATGACACAACGGTGATAGTCGTGTTTCTGGGTTCAAGCAGAGGGGAAAGAAGCCCTGTTTTGTCTGTGAGAGGGGGAGGAGTGAAGGTATATGCGAAGTCAGGGCTGAACACTGCCCCTTCGTAA 1176 49.49 MLSSLMNLLRACWQPCAARHLRRRGGGGGSDSVGCQDGLLWYKDHGHHINGEFSMAVVQANNLLEDQSQLESGPLSLLESGPYGTFVGIYDGHGGPETSRFICDNLFQHLKVFATEEKAMSVNVIKKAFQATEEGFLSIVTKQWPMNPQIAAVGSCCLVAVICNGKLYVANLGDSRAVLGRLVRSTGEVLPIQLSSEHNVSIQSVRQEMQSMHPDDSQIVVLKHNVWRVKGLIQISRSIGDVYLKKPEFNREPLYTKFRLREPFSKPILSSEPAVSVHELDPDDQFLIFASDGLWEHLSNQDAVDIVHKHPHSGSARRLVKAAMQEAAKKREMRYSDLKKIDRGVRRHFHDDTTVIVVFLGSSRGERSPVLSVRGGGVKVYAKSGLNTAPS 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9262899 9265819 + CmoCh16G013010.1 Cmo16g01301 400336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01301 391 ProSiteProfiles PPM-type phosphatase domain profile. 52 360 IPR001932 -
Cmo16g01301 391 PANTHER ALPHABET, ISOFORM E-RELATED 6 383 - -
Cmo16g01301 391 PANTHER PROTEIN PHOSPHATASE 2C 60-RELATED 6 383 - -
Cmo16g01301 391 CDD PP2Cc 84 360 IPR001932 -
Cmo16g01301 391 SUPERFAMILY PP2C-like 65 361 IPR036457 -
Cmo16g01301 391 SMART PP2C_4 44 358 IPR001932 -
Cmo16g01301 391 Gene3D - 42 367 IPR036457 -
Cmo16g01301 391 ProSitePatterns PPM-type phosphatase domain signature. 86 94 IPR000222 GO:0043169
Cmo16g01301 391 Pfam Protein phosphatase 2C 85 329 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01752 Cmo-Chr11:12348584 Cmo16g01301 Cmo-Chr16:9262899 0 dispersed
Cmo16g01301 Cmo-Chr16:9262899 Cmo19g00763 Cmo-Chr19:7736007 0 dispersed
Cmo16g01301 Cmo-Chr16:9262899 Cmo03g00683 Cmo-Chr3:6014543 0 wgd
Cmo16g01301 Cmo-Chr16:9262899 Cmo06g00126 Cmo-Chr6:696809 6.71E-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01301 K01102 - csv:101220137 702.205