Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01302 ATGGATTTCATCGCGAATCCATTTCGATTTTCTTCATCTTCCTCGCCTTCGTTTGGTAATCTCTTTGAGAGAGTTCGAGACATTTGTTGCTATGCGGTTTCTGCGATTCTTGGCAACGTCTTGTCCGCGATCTTCACTTTTTTCTTCGCCCTAGTGGGGACTTTGCTTGGGGCCATGACTGGCGCATTGATTGGCCAAGAAACAGAGAGTGGGTTTGTTAGAGGAGCGGCTGTTGGGGCAATTTCTGGAGCTGTTTTCTCCATTGAAGTCTTTGAATCTTCTCTGGTTCTTTGGCAATCAGATGAATCAGGGATTGGCTGTCTTCTTTATCTGATTGATGTCATTGCAAGCCTCCTAAGCGGACGACTCGTTCGAGAACGGATTGGTCCAGCCATATTGAGCGCAGTTCAAAGTCAGATGGGTGCTACAGAGACGAGCTTTGACGACATCCCAAACATCTTCGATACGAGTAGCGCAAAAGGATTGCCTGGGGACTCGGTCGAGAAAATTCCCAAGATCTTAGTATCTAAGAACAACAGTGTAGATGCTTACGGCGAGCGAGTCTGTTGTTCTGTTTGCCTTCAGGACTTTCAACTAGGAGAGACTGTAAGAAGTTTACCATATTGCCATCACATGTTCCATTTGCCCTGCATTGATAAATGGCTTCTTACTCATGGCTCTTGCCCTTTATGTAGAAGGGATCTGTAA 708 45.9 MDFIANPFRFSSSSSPSFGNLFERVRDICCYAVSAILGNVLSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGATETSFDDIPNIFDTSSAKGLPGDSVEKIPKILVSKNNSVDAYGERVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLLTHGSCPLCRRDL 235
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
16 9267706 9269643 - CmoCh16G013020.1 Cmo16g01302 400337
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01302 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 1 9 235 - -
Cmo16g01302 235 SUPERFAMILY RING/U-box 177 235 - -
Cmo16g01302 235 SMART ring_2 190 231 IPR001841 -
Cmo16g01302 235 Pfam Ring finger domain 190 232 IPR001841 -
Cmo16g01302 235 CDD RING-H2_PA-TM-RING 189 232 - -
Cmo16g01302 235 Pfam YMGG-like Gly-zipper 49 85 IPR027367 -
Cmo16g01302 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 235 IPR013083 -
Cmo16g01302 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Cmo16g01302 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 9 235 IPR044523 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g01302 Cmo-Chr16:9267706 Cmo14g01978 Cmo-Chr14:14563522 6.95E-16 dispersed
Cmo16g01302 Cmo-Chr16:9267706 Cmo06g00127 Cmo-Chr6:701215 5.04E-159 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01302 - - csv:101220376 457.988