Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01322 ATGATGGAGTGGGAAAAGGCTGAGCACCAAACTCCGTACCACCACCAGAACCCTCCTCTTCGAGACGATCACCTCCATCATCTCACCGGAACTACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAGACACTCACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAACATGTACTGTGAGCCGCTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGCGATGGACTCCAACGCCTGTGCAACTTCAGATCTTGGAGCGCATATTCGAGCAAGGGAATGGAACTCCCAGCAAGCAGAAGATCAAAGAGATCACCTCTGAACTGGGTCAGCATGGCCAAATTTCTGAATCTAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCGAAGAGGAAGCAGCAAAGCACAGCACCCGCCTATGGCGAATCAGAAGTGGAGACAGAAGTCGAGTCGCCGAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAAACCTCTGCACCTTTGGGGGATGACATGTGCTTCCAGAGTCCGGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACACCAACAAAGCTGATACTTTGTTTTCAAATGGAAGTTTAAAAACTGCAAGAAGTTTCAGCCAGATGTCTTTTTATGAGGCAGGAAACGAGCAGCTGTCAGGAAAGATTGAAACGCCAGATAACTATAGTCTTTACCAGCAAGCGGAAGGCTACAGCATGACCGAACGACCCTAA 837 48.51 MMEWEKAEHQTPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYGESEVETEVESPKDKKTKPVDFQTHQTSAPLGDDMCFQSPEMSSELHFLDPNTNKADTLFSNGSLKTARSFSQMSFYEAGNEQLSGKIETPDNYSLYQQAEGYSMTERP 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9380247 9382519 - CmoCh16G013220.1 Cmo16g01322 400357

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01322 278 MobiDBLite consensus disorder prediction 175 189 - -
Cmo16g01322 278 CDD homeodomain 100 162 IPR001356 GO:0003677
Cmo16g01322 278 Pfam Homeodomain 100 160 IPR001356 GO:0003677
Cmo16g01322 278 MobiDBLite consensus disorder prediction 158 189 - -
Cmo16g01322 278 PANTHER - 2 275 - -
Cmo16g01322 278 SUPERFAMILY Homeodomain-like 96 164 IPR009057 -
Cmo16g01322 278 Gene3D - 102 166 - -
Cmo16g01322 278 ProSiteProfiles 'Homeobox' domain profile. 96 161 IPR001356 GO:0003677
Cmo16g01322 278 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 275 IPR044559 GO:0003700
Cmo16g01322 278 SMART HOX_1 98 165 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01322 - - - csv:101203410 530.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00049 Cmo-Chr9:208487 Cmo16g01322 Cmo-Chr16:9380247 3.03E-63 dispersed
Cmo16g01322 Cmo-Chr16:9380247 Cmo11g00316 Cmo-Chr11:1528835 3.53E-15 dispersed
Cmo01g02079 Cmo-Chr1:14469978 Cmo16g01322 Cmo-Chr16:9380247 2.16E-77 wgd
Cmo16g01322 Cmo-Chr16:9380247 Cmo06g00143 Cmo-Chr6:768695 1.25E-174 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo13g01029 CCT,CST,ECH 1 194 Wox Gene Family AT3G18010 56.5 3.0e-46 183.3
Cmo11g00316 CCT,ECH 1 140 Wox Gene Family AT3G18010 62.1 1.7e-38 157.5
Cmo06g00062 . 4 226 Wox Gene Family AT3G03660 54.3 3.1e-52 203.0
Cmo14g00462 . 14 243 Wox Gene Family AT3G03660 50.4 2.6e-43 173.3
Cmo16g01322 . 1 275 Wox Gene Family AT4G35550 51.0 7.8e-71 264.6
Cmo06g00143 . 31 268 Wox Gene Family AT4G35550 53.7 9.8e-66 247.7
Cmo01g02079 CST 1 162 Wox Gene Family AT4G35550 67.5 1.3e-54 210.7
Cmo06g00143 . 31 170 Wox Gene Family AT1G20700 55.9 5.9e-39 158.3
Cmo01g02079 CST 38 169 Wox Gene Family AT1G20700 58.5 1.0e-38 157.5
Cmo05g00169 CST 5 173 Wox Gene Family AT1G46480 59.9 1.9e-47 186.4
Cmo12g00505 CST 5 138 Wox Gene Family AT1G46480 62.8 1.7e-43 173.3
Cmo07g00209 CST 1 388 Wox Gene Family AT2G33880 50.5 9.2e-65 245.0
Cmo13g01029 CCT,CST,ECH 1 194 Wox Gene Family AT3G18010 56.5 3.0e-46 183.3
Cmo11g00316 CCT,ECH 1 140 Wox Gene Family AT3G18010 62.1 1.7e-38 157.5
Cmo05g00169 CST 5 173 Wox Gene Family AT1G46480 59.9 1.9e-47 186.4
Cmo12g00505 CST 5 138 Wox Gene Family AT1G46480 62.8 1.7e-43 173.3
Cmo07g00209 CST 1 388 Wox Gene Family AT2G33880 50.5 9.2e-65 245.0
Cmo06g00062 . 4 226 Wox Gene Family AT3G03660 54.3 3.1e-52 203.0
Cmo14g00462 . 14 243 Wox Gene Family AT3G03660 50.4 2.6e-43 173.3
Cmo16g01322 . 1 275 Wox Gene Family AT4G35550 51.0 7.8e-71 264.6
Cmo06g00143 . 31 268 Wox Gene Family AT4G35550 53.7 9.8e-66 247.7
Cmo01g02079 CST 1 162 Wox Gene Family AT4G35550 67.5 1.3e-54 210.7
Cmo06g00143 . 31 170 Wox Gene Family AT1G20700 55.9 5.9e-39 158.3
Cmo01g02079 CST 38 169 Wox Gene Family AT1G20700 58.5 1.0e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11347 PF00046 Homeodomain 8.90E-19 CL0123 Cmo TF