Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01322 ATGATGGAGTGGGAAAAGGCTGAGCACCAAACTCCGTACCACCACCAGAACCCTCCTCTTCGAGACGATCACCTCCATCATCTCACCGGAACTACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAGACACTCACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAACATGTACTGTGAGCCGCTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGCGATGGACTCCAACGCCTGTGCAACTTCAGATCTTGGAGCGCATATTCGAGCAAGGGAATGGAACTCCCAGCAAGCAGAAGATCAAAGAGATCACCTCTGAACTGGGTCAGCATGGCCAAATTTCTGAATCTAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCGAAGAGGAAGCAGCAAAGCACAGCACCCGCCTATGGCGAATCAGAAGTGGAGACAGAAGTCGAGTCGCCGAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAAACCTCTGCACCTTTGGGGGATGACATGTGCTTCCAGAGTCCGGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACACCAACAAAGCTGATACTTTGTTTTCAAATGGAAGTTTAAAAACTGCAAGAAGTTTCAGCCAGATGTCTTTTTATGAGGCAGGAAACGAGCAGCTGTCAGGAAAGATTGAAACGCCAGATAACTATAGTCTTTACCAGCAAGCGGAAGGCTACAGCATGACCGAACGACCCTAA 837 48.51 MMEWEKAEHQTPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYGESEVETEVESPKDKKTKPVDFQTHQTSAPLGDDMCFQSPEMSSELHFLDPNTNKADTLFSNGSLKTARSFSQMSFYEAGNEQLSGKIETPDNYSLYQQAEGYSMTERP 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9380247 9382519 - CmoCh16G013220.1 Cmo16g01322 400357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01322 278 MobiDBLite consensus disorder prediction 175 189 - -
Cmo16g01322 278 CDD homeodomain 100 162 IPR001356 GO:0003677
Cmo16g01322 278 Pfam Homeodomain 100 160 IPR001356 GO:0003677
Cmo16g01322 278 MobiDBLite consensus disorder prediction 158 189 - -
Cmo16g01322 278 PANTHER - 2 275 - -
Cmo16g01322 278 SUPERFAMILY Homeodomain-like 96 164 IPR009057 -
Cmo16g01322 278 Gene3D - 102 166 - -
Cmo16g01322 278 ProSiteProfiles 'Homeobox' domain profile. 96 161 IPR001356 GO:0003677
Cmo16g01322 278 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 275 IPR044559 GO:0003700
Cmo16g01322 278 SMART HOX_1 98 165 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00049 Cmo-Chr9:208487 Cmo16g01322 Cmo-Chr16:9380247 3.03E-63 dispersed
Cmo16g01322 Cmo-Chr16:9380247 Cmo11g00316 Cmo-Chr11:1528835 3.53E-15 dispersed
Cmo01g02079 Cmo-Chr1:14469978 Cmo16g01322 Cmo-Chr16:9380247 2.16E-77 wgd
Cmo16g01322 Cmo-Chr16:9380247 Cmo06g00143 Cmo-Chr6:768695 1.25E-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11347 PF00046 Homeodomain 8.90E-19 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01322 - - csv:101203410 530.02