Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01342 ATGTCGTTGAAGCCTTCGGATTTGGACTCTTCAGCTTTTGATGCGCAATCTTCGTCCAATCCGATTCCCTCGGATGCTACTCCGGTTCCCTTGGATCCCCCCTCCACCTCCTCCACCCTCTCTGAATCTGAAGAAAATCACTGCTCATCGTCCTCACCTTCCTCCACACCACCTCCGGTTCATTTACCTCTCTCTTGGCCTCCCGATGCCACTCTTTCCCTTCAATGGATTCAGCATCTCATCGCCGCTTTCGATTGGTCTTCCAAAAATTTATCTCCATCCGAGTTTCCTTCTGTTCTTCCCGTCTCTGTTTTCGACACTCTAATCCTCACAGCTTCCAAAATCCTCCACAAAGAACCCAATTGCCTTAGAATCCTCGACGACTCAGTCGCCAGCAGCGACTCGACTGTAGTCGTTGTCGGAGACATCCACGGGCAATTTCATGATCTCATCTTTCTTCTGCAGGATGCTGGGTTTCCTTCTGATAATCGTTTCTTTGTCTTCAATGGTGATTACGTCGACAGAGGGGCTTGGGGTCTTGAAACTTTTATTCTCTTATTGGCTTGGAAGGTGTTTATGCCACATCGGGTATTTCTTCTTCGTGGAAACCACGAGTCCAAGTACTGCACATCCGTTTATGGTTTTGAGAAGGAGGTTCTAACCAAGTACGGAGACAAAGGTAAGCATGTCTATCGGAAGTGTTTGGGGTGTTTCGAAGGGCTGCCTTTGGCCTCCATTATAGCTGGACGTGTATTTACGGCTCATGGAGGACTTTTCCGCAGCATATCAGTTCCTTCATCTAAAAGATCAAAAGGGAAGAAAAATCGTAGGATAATCTTAAATCCTGAAGCCAACGGGTTATCTCTTGGTTCATTAGAGGAACTATCCAAAGCCAGAAGATCGGTTCTTGATCCCCCATGGGAAGGCTTGAATTTAATACCTGGTGATGTGTTGTGGTCTGATCCCTCGATGACTCCCGGGCTCTCCCCAAATAGAGAGAGAGGCATAGGTCTCTTGTGGGGTCCTGATTGCACTGAAGAATTCTTGAAAAAATTCGATCTGAAGCTAATTATCAGATCCCATGAAGGTCCTGATGCTAGAGAAAAGAGACCCGGTCTTGGAGGAATGGATCAGGGTTACACGATAGATCATGTTGTAGATTCTGGGAAATTGATTACTTTGTTTAGTGCTCCAGACTATCCACAATTTCAGGCTACTGGGAAGAGGTACAAAAATAAAGGTGCATATATTGTTCTAGAACCTCCGAATTTTGATGTTCCACTCATTCATAGTTTTGAAGCCATTACTCCACGACCGAAGGTCAATGCGTACTATGATTTTGAGGATGTAATTGACTCTGACGAAGAATTAGATTTGGCAACAATGACAACTGATTCATGA 1401 45.32 MSLKPSDLDSSAFDAQSSSNPIPSDATPVPLDPPSTSSTLSESEENHCSSSSPSSTPPPVHLPLSWPPDATLSLQWIQHLIAAFDWSSKNLSPSEFPSVLPVSVFDTLILTASKILHKEPNCLRILDDSVASSDSTVVVVGDIHGQFHDLIFLLQDAGFPSDNRFFVFNGDYVDRGAWGLETFILLLAWKVFMPHRVFLLRGNHESKYCTSVYGFEKEVLTKYGDKGKHVYRKCLGCFEGLPLASIIAGRVFTAHGGLFRSISVPSSKRSKGKKNRRIILNPEANGLSLGSLEELSKARRSVLDPPWEGLNLIPGDVLWSDPSMTPGLSPNRERGIGLLWGPDCTEEFLKKFDLKLIIRSHEGPDAREKRPGLGGMDQGYTIDHVVDSGKLITLFSAPDYPQFQATGKRYKNKGAYIVLEPPNFDVPLIHSFEAITPRPKVNAYYDFEDVIDSDEELDLATMTTDS 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9465540 9471706 + CmoCh16G013420.1 Cmo16g01342 400377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01342 466 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 7 43 462 - -
Cmo16g01342 466 MobiDBLite consensus disorder prediction 1 62 - -
Cmo16g01342 466 SUPERFAMILY Metallo-dependent phosphatases 95 437 IPR029052 -
Cmo16g01342 466 ProSitePatterns Serine/threonine specific protein phosphatases signature. 200 205 IPR006186 GO:0016787
Cmo16g01342 466 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 43 462 - -
Cmo16g01342 466 SMART pp2a_7 100 439 IPR006186 GO:0016787
Cmo16g01342 466 CDD MPP_PP7 66 446 IPR041754 -
Cmo16g01342 466 Gene3D - 92 455 IPR029052 -
Cmo16g01342 466 Pfam Calcineurin-like phosphoesterase 136 364 IPR004843 GO:0016787
Cmo16g01342 466 MobiDBLite consensus disorder prediction 1 55 - -
Cmo16g01342 466 PRINTS Serine/threonine phosphatase family signature 136 163 IPR006186 GO:0016787
Cmo16g01342 466 PRINTS Serine/threonine phosphatase family signature 166 193 IPR006186 GO:0016787
Cmo16g01342 466 PRINTS Serine/threonine phosphatase family signature 199 223 IPR006186 GO:0016787
Cmo16g01342 466 PRINTS Serine/threonine phosphatase family signature 236 262 IPR006186 GO:0016787
Cmo16g01342 466 PRINTS Serine/threonine phosphatase family signature 296 323 IPR006186 GO:0016787
Cmo16g01342 466 PRINTS Serine/threonine phosphatase family signature 390 406 IPR006186 GO:0016787
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02756 Cmo-Chr4:19941647 Cmo16g01342 Cmo-Chr16:9465540 1.02E-133 dispersed
Cmo16g01342 Cmo-Chr16:9465540 Cmo11g02029 Cmo-Chr11:13832130 1.57E-52 dispersed
Cmo16g01342 Cmo-Chr16:9465540 Cmo06g00163 Cmo-Chr6:865841 1.74E-41 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01342 K04460 - csv:116402510 793.497