Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00004 ATGGACAATTACGGTTCTTCCCCTTCATATCCATACCACCATCCATATGCATACCCTCGTCCAGTTCCTCCTCAATACCCACCGCCTCCTCAATATCCACCTCCTCCTCAACATCCACCTCCTCCTCATTATACGCATCCAAATTCAGATCCATATGCTCGTCCTCCGTACCCTTACCCGTATGATCCTTCACATGCCTCTGTATTTGCATATCCCCCACCCCCATCTCATTCTGCCCAAGTAGAGTATTTTCAACATCCACCTCCACATTCTGGGCCTGTACCTTCCCCATATTCTTACGGTGACGCCTCTTATACTAATGATAGTGCCAGGCCATCCATTCAATATCATAACAATTTCCAACCTGGTACATCCCCATATCGGTATGAAGAATCTAGTACATACCCTCCCCCAGAAACTCAATACCCACCACCCCCTTCGCGAGTAAATAACTCCTCTGGCCACTATGATAGCACTGATTCGGTATCGCCTGGCTCTTCTGCATACCCGCCTTTGGATGACCCTTTGTGTAATATACATTTGTCTGATCATCAACCAACTGCTCCTGCATCACCTCCTGCACCTGCGCAGCCTTCAGTTTCATTATTGTCGCATTCACCTCAAATTTCAAGATATGATCGATTCACCTCAAATTACAAGAATGAAGAATCTAGTACATACCCTCCCTCAGAAAGTCAATACCCACCACCCCCTTCACGAGTAAATAGCTTCTCTGGCCACTATGATAGCCCTGATTCTGTTTCGCCTGTCTCCTCTGCATACCCGCCTTTGGATAGCCCTTTGTGTAATGTACATTTGTCTGATCATCAACCAACTGCTCCTGCATCACCTCCTGCACCTGCGCAGCCTTCAGTTTCATTATTGTCGCATTCACCTCAAATTTCAAGATATGATCGATTCACCTCAAATTACAAGAATGAAGAATCTAGTACATACCCTCCCCCAGAAAGTCAATACCCACCACCCCCTTCACGAGTAAATAGCTTCTCTGGCCACTATGATAGCCCTGATTCTGTTTCGCCTGTCTCCTCTGCATACCCGCCTTTGGATAGCCCTTTGTGTAATGTACATTTGTCTGATCATCAACCAACTGCTCCTGCATCACCTCCTGCACCTGCGCAGCCTTCAGTTTCATTATTGTCGCATTCACCTCAAATTTCAAGATATGATCGATTCACCTCAAATTACAAGAATGAAGAATCTAGTACATACCCTCCCTCAGAAAGTCAATACCCACCACCCCCTTCACGAGTAAATAGCTTCTCTGGCCACTATGATAGCCCTGATTCTGTTTCGCCTGTCTCCTCTGCATACCCGCCTTTGGATAGCCCTTTGTGTAATGTACATTTGTCTGATCATCAACCAACTGCTCCTGCATCACCTCCTGCACCTGCGCAGCCTTCAGTTTCATTATTGTCGCATTCACCTCAAATTTCAAGATATGATCGATTCACCTCAAATTACAAGAATGAAGAACCTGGTACATACCCTCCCCCAGAAAGTCAATACCCACCACCCCCTTCACGAGCAAATAGCTTCTCTGGCCACTATAATGGCACTGATTCCTCATCGCCTGTCTCTTATGCATACCCGCCTCTGGATGACCTTTTGGGTAATGTACATTTGTCTGATCATCAACCTACTTCTCCTGCATCACCTTCAGTGCCTGCACAGCCTTCAGTTTCATTATTGTCGCATTCACCTCAAATTATAAGATATGATCGGCGTGACCGATTTTATGGCTTTCCTAATTCATCATTTTCTAGTTTCGATACGGGGAATTCATATCAAATGGCTTCATCCAACCAACCTTCATTTTCCCATTCAAGCTCATTTGGTGGGTCTCAACATAGTCAGAACTTGCAGATTGTTCCATTGCACAGTAAAGCATCATTGAAGGTTTTGCTGTTGCATGGAAACTTAGAAATATGGGTTAATGAGGCCAAAAATCTTCCAAATATGGACATGTTTCACAAGACCTTGGGGGATATGTTTGCAAAATTACCTGGGAATATGAGCAACAAAGTTGAAGGACATGTGAGTCATAAGATCACTAGTGATCCTTATGTTTCGATCTATGTAGCAAATGCAGTAATTGGGAGGACTTTTGTTATAAGCAACAATGAAAATCCTGAATGGAGGCAGCATTTCTATGTTCCCGTTGCACATTATGCTGCTGAAGTAGTTTTTGTCGTTAAAGACAGTGATGTTGTTGGTTCGCAGCTAATAGGAACTGTAACAATTCCTGCAGAACAAATATATGCAGGGTCTGTAGTTGAGGGAACCTTCCCAATCCTACTTGGTGGGAAGCCATGTAAGCCTGGAGCTGCTCTAACTATTTCTATTCAATATACCCCAATGGACAGGCTTAGCACTTATCATCATGGAGTGGGAGCTGGCCCTGATTACCAGGGGGTTCCTGATACATATTTCCCCCTCAGAAAGGGTGGAGCTGTCACTCTGTACCAAGATGCCCATGTTCCAGATGGACACCTTCCAAATTTGATGCTTGATAATGGTATGTACTATGTACATGGGAAGTGTTGGCATGACATCTTTGATGCTGTACGTCAGGCTCGCAGGTTAATTTATATAACTGGGTGGTCGGTGTGGCACAAAGTGAAACTAGTTCGAGATACTGGCTATGGGACAGAGTGTACCCTTGGAGATCTCCTGAGGTCAAAGTCCCAGGAGGGAGTGAGAGTTTTGCTTCTTGTTTGGGACGATCCCACTTCTAGGAGCATTTTGGGATATAAAACTGATGGTTTCATGCAAACCCATGATGAGGAAACTCGCCGATTTTTCAAACAATCCTCTGTACAAGTGATACTTTGTCCTCGGATGGCTGGAAAACGACATAGCTGGGTTAAGCAAAAGAAAATTGGCCACTTAAACCTGTACATTTTCAGCTTCAGTTGTTTCTATTTCGATTCAATTAGGAATATACAAAAAAGTGTTTTGATATTGATAGGTGTAATGTTTGGGGAAGTTGGAACTATCTATACACACCATCAGAAAACAGTTATTGTGGATGCTGATGCTGGAAATAATAGAAGAAAAATCATAGCTTTTGTTGGAGGGCTCGATTTATGTGACGGGCGGTATGATAATCCATCACATCCCATATTTCGGACACTTCAAACAGTACACAAGGATGATTACCACAATCCTACATACACGGTAATCTGTTATGTCCCACTTTGTCTTTTAATAGTTAATATGGTTCTGCGCAGGGCAAGCTACGCAATATTTGAAGAAGTGGAGTTTACATTGTTGATATTTGTAGAAGTCACAGGATTGAAGGGTGTGTTATCATTTACATTTCAACAAGGTAGTACTGTTGGTTGTCCAAGAGAACCGTGGCATGATCTGCACAGCAAAATTGAAGGTCCAGCAGCATATGATGTTTTGACCAATTTTGAGGAGCGATGGAGGAGAGCTTCAAAACCTCACGGGATAAAAAAGTTGAAATCATATGATGATGCTTTGCTGCGTATTGAAAGAATTCATGACATAATTGGAATTTCTGAAGCGTACTGTAACTATGAAAATGATCCTGAATCATGGCATGTGCAGATTTTTCGTTCAATTGATTCAAGTTCTGTTAAAGATTTCCCGAAGGACCCAAAAGATGCCCCAAGCAAGAACCTCGTATGTGGAAAGAATGTGCTGATTGACATGAGTATACACACAGCATACGTGAAAGCCATTCGAGCTGCCCAACACTACATTTATATAGAGAACCAATATTTCATTGGATCATCCTTCAATTGGAATTCAAACAAAGATATAGGTGCCAACAATTTGATTCCAATGGAAATTGCGCTAAAGATTGCTGATAAAATCAGAGGAAATGAGAGGTTTGCTGCATATATTGTCATCCCCATGTGGCCTGAGGGCGTCCCAACTGCTGCTGCCACTCAGAGAATACTATTTTGGCAGCAAAAAACCATGCAAATGATGTATGAGGTCATTTACAAGGCCTTGATGGAGGTTGGTCTTGAGGAGGCATTCTCTCCTCAAGACTATTTGAACTTCTTCTGCCTGGGAAATCGTGAGGATGTGGATGGAAATGATCCTTTATCTTCTGGAAGCCCTAGTGCAGAAAACTCTCCACAGGTAACTTATATCCTTAGTCAGTTGTTGATTTCAGTCGCACTTAGTCGGAAAAGCAGAAGATTTATGATATATGTTCACTCCAAAGGCATGATAGTTGATGACGAGTATGTGATTTTGGGATCTGCTAACATCAACCAAAGATCCATGGAAGGAACTAGAGACACTGAGATTGCTATGGGATCCTATCAACCTCATTATACATGGGCAAAGAAGCGTTCACGTCCTCGTGGACAGATCTATGGATATAGGATGTCGTTGTGGGCGGAGCATACAGGAACGATGGAAGAGTGTTTCAATGAACCGGAGAGCCTGGAATGCGTGAGAAGAGTTAGAACAATGGGAGAATTAAACTGGAAACAGTTTGCTGCAGATGAAGTAACAGAGATGAGAGGACACCTTCTGAAGTACCCTGTTGAAGTTGATAGAAGAGGGAGAGTAAAATCCCTTCCTGGACATGAAAATTTTCCAGACGTAGGAGGAAAAATAGTTGGTTCATTTCTTGGGATTCAGGAGAACCTCACTATCTAA 4668 43.02 MDNYGSSPSYPYHHPYAYPRPVPPQYPPPPQYPPPPQHPPPPHYTHPNSDPYARPPYPYPYDPSHASVFAYPPPPSHSAQVEYFQHPPPHSGPVPSPYSYGDASYTNDSARPSIQYHNNFQPGTSPYRYEESSTYPPPETQYPPPPSRVNNSSGHYDSTDSVSPGSSAYPPLDDPLCNIHLSDHQPTAPASPPAPAQPSVSLLSHSPQISRYDRFTSNYKNEESSTYPPSESQYPPPPSRVNSFSGHYDSPDSVSPVSSAYPPLDSPLCNVHLSDHQPTAPASPPAPAQPSVSLLSHSPQISRYDRFTSNYKNEESSTYPPPESQYPPPPSRVNSFSGHYDSPDSVSPVSSAYPPLDSPLCNVHLSDHQPTAPASPPAPAQPSVSLLSHSPQISRYDRFTSNYKNEESSTYPPSESQYPPPPSRVNSFSGHYDSPDSVSPVSSAYPPLDSPLCNVHLSDHQPTAPASPPAPAQPSVSLLSHSPQISRYDRFTSNYKNEEPGTYPPPESQYPPPPSRANSFSGHYNGTDSSSPVSYAYPPLDDLLGNVHLSDHQPTSPASPSVPAQPSVSLLSHSPQIIRYDRRDRFYGFPNSSFSSFDTGNSYQMASSNQPSFSHSSSFGGSQHSQNLQIVPLHSKASLKVLLLHGNLEIWVNEAKNLPNMDMFHKTLGDMFAKLPGNMSNKVEGHVSHKITSDPYVSIYVANAVIGRTFVISNNENPEWRQHFYVPVAHYAAEVVFVVKDSDVVGSQLIGTVTIPAEQIYAGSVVEGTFPILLGGKPCKPGAALTISIQYTPMDRLSTYHHGVGAGPDYQGVPDTYFPLRKGGAVTLYQDAHVPDGHLPNLMLDNGMYYVHGKCWHDIFDAVRQARRLIYITGWSVWHKVKLVRDTGYGTECTLGDLLRSKSQEGVRVLLLVWDDPTSRSILGYKTDGFMQTHDEETRRFFKQSSVQVILCPRMAGKRHSWVKQKKIGHLNLYIFSFSCFYFDSIRNIQKSVLILIGVMFGEVGTIYTHHQKTVIVDADAGNNRRKIIAFVGGLDLCDGRYDNPSHPIFRTLQTVHKDDYHNPTYTVICYVPLCLLIVNMVLRRASYAIFEEVEFTLLIFVEVTGLKGVLSFTFQQGSTVGCPREPWHDLHSKIEGPAAYDVLTNFEERWRRASKPHGIKKLKSYDDALLRIERIHDIIGISEAYCNYENDPESWHVQIFRSIDSSSVKDFPKDPKDAPSKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSFNWNSNKDIGANNLIPMEIALKIADKIRGNERFAAYIVIPMWPEGVPTAAATQRILFWQQKTMQMMYEVIYKALMEVGLEEAFSPQDYLNFFCLGNREDVDGNDPLSSGSPSAENSPQVTYILSQLLISVALSRKSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGSYQPHYTWAKKRSRPRGQIYGYRMSLWAEHTGTMEECFNEPESLECVRRVRTMGELNWKQFAADEVTEMRGHLLKYPVEVDRRGRVKSLPGHENFPDVGGKIVGSFLGIQENLTI 1555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 29457 40989 + CmoCh17G000040.1 Cmo17g00004 400387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00004 1555 ProSiteProfiles C2 domain profile. 624 770 IPR000008 -
Cmo17g00004 1555 MobiDBLite consensus disorder prediction 421 444 - -
Cmo17g00004 1555 PANTHER PHOSPHOLIPASE D 1118 1555 IPR015679 -
Cmo17g00004 1555 MobiDBLite consensus disorder prediction 1 569 - -
Cmo17g00004 1555 MobiDBLite consensus disorder prediction 289 320 - -
Cmo17g00004 1555 PANTHER PHOSPHOLIPASE D ALPHA 1 1118 1555 - -
Cmo17g00004 1555 SMART pld_4 1401 1428 IPR001736 GO:0003824
Cmo17g00004 1555 SMART pld_4 1006 1041 IPR001736 GO:0003824
Cmo17g00004 1555 MobiDBLite consensus disorder prediction 146 166 - -
Cmo17g00004 1555 MobiDBLite consensus disorder prediction 237 260 - -
Cmo17g00004 1555 MobiDBLite consensus disorder prediction 100 136 - -
Cmo17g00004 1555 MobiDBLite consensus disorder prediction 473 499 - -
Cmo17g00004 1555 SUPERFAMILY Phospholipase D/nuclease 1169 1487 - -
Cmo17g00004 1555 Pfam Phospholipase D Active site motif 1007 1041 IPR001736 GO:0003824
Cmo17g00004 1555 Pfam Phospholipase D Active site motif 1402 1428 IPR001736 GO:0003824
Cmo17g00004 1555 Pfam Phospholipase D C terminal 1475 1545 IPR024632 -
Cmo17g00004 1555 Pfam C2 domain 646 772 IPR000008 -
Cmo17g00004 1555 SMART C2_3c 647 769 IPR000008 -
Cmo17g00004 1555 MobiDBLite consensus disorder prediction 514 534 - -
Cmo17g00004 1555 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1401 1428 IPR001736 GO:0003824
Cmo17g00004 1555 Gene3D Endonuclease Chain A 1205 1448 - -
Cmo17g00004 1555 MobiDBLite consensus disorder prediction 14 70 - -
Cmo17g00004 1555 CDD C2_plant_PLD 640 792 - -
Cmo17g00004 1555 MobiDBLite consensus disorder prediction 549 569 - -
Cmo17g00004 1555 Gene3D C2 domain 641 782 IPR035892 -
Cmo17g00004 1555 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1006 1041 IPR001736 GO:0003824
Cmo17g00004 1555 PANTHER PHOSPHOLIPASE D 547 1067 IPR015679 -
Cmo17g00004 1555 SUPERFAMILY Phospholipase D/nuclease 811 1155 - -
Cmo17g00004 1555 Gene3D Endonuclease Chain A 848 1169 - -
Cmo17g00004 1555 PANTHER PHOSPHOLIPASE D ALPHA 1 547 1067 - -
Cmo17g00004 1555 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 644 794 IPR035892 -
Cmo17g00004 1555 MobiDBLite consensus disorder prediction 197 229 - -
Cmo17g00004 1555 MobiDBLite consensus disorder prediction 381 413 - -
Cmo17g00004 1555 MobiDBLite consensus disorder prediction 330 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00749 Cmo-Chr6:3897532 Cmo17g00004 Cmo-Chr17:29457 0 dispersed
Cmo08g00643 Cmo-Chr8:4179383 Cmo17g00004 Cmo-Chr17:29457 0 dispersed
Cmo17g00004 Cmo-Chr17:29457 Cmo08g00909 Cmo-Chr8:5910019 3.49E-14 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00004 K01115 - csv:101218942 1751.49