Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00006 ATGGCCGATATTCACAAACAAGACCTCGACGACCACCACCACTCTCCGCCCACCCATCTCTCTATCAATAACTCCGACTCCTCTCCAATGAACCTTCTTCCCCTTGCTCCCAAGCGGGAGCATCCCGACAACGACCACGAAACTCAGGTCGTCAAGTTCACGGCAGAGATACCTAAAACGGTCTCGTCTATCCCCCCCAAGAGACCCTCCACCAAGGATCGCCACACCAAGGTCGAGGGCCGAGGCCGGAGAATCCGAATTCCGGCTACCTGTGCGGCGCGTATCTTCCAATTGACTCGTGAGCTCGGCCACAAGTCCGACGGCGAAACCATCCGCTGGCTTCTCGAACGGGCCGAGCCGGCGATCATCGCGGCTACTGGGACTGGTACCGTTCCCGCCATCGCCATGTCTGTTAATGGCACTCTCAAAATCCCCACCACCACTTCCTCTTCTAACCAAGATTCCACCGATCAATCCGCCAGTAAGAAGCGGCGTAAGCGCCCCGCTAACAGTGACTATGTTGACGTAAATGACGCCGTTTCCGTTTCCGTCTCCGCCTCCGCCTCCGCCTCCGCCTCGAACGGCTGTGTTCAGGCCGCTACCGTTGCCGGTTCCCCCGCCGTCCAACAGCCTTTTCCACCGGGGTTTGTTCCAGTGTGGGCCATCCCATCGAACGCCATAATTCCCGGGGCGGTTTTCATGGTTCCATCCGTGGATTGCTCTTCCACCCGTCCGCAGTTTTTCTCATTCCCGACCCCGGCAGCGCCGCTCATCAACACAACGGCCCGACCCATTTCCACCGTCCCGTCGAAGCTGCACACATCTCACATTCAAGCAAACACCACCAATCAAAGCTCGAGCACTTCAAACTCCTCCGCTTCCAAGTCTGAATCCGTCATGGCGCCGATCTCGAGCTCCACCGTCACGACAAACGGCAAAACTACGAAACAGATGCTCAGAGAATTCTCATTGGAGATATACGATAAGGAAGAGCTTCAATTCATGTCTCGCTCGTCGGAAAGAATGAAGACAGAATAG 1038 56.36 MADIHKQDLDDHHHSPPTHLSINNSDSSPMNLLPLAPKREHPDNDHETQVVKFTAEIPKTVSSIPPKRPSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTVPAIAMSVNGTLKIPTTTSSSNQDSTDQSASKKRRKRPANSDYVDVNDAVSVSVSASASASASNGCVQAATVAGSPAVQQPFPPGFVPVWAIPSNAIIPGAVFMVPSVDCSSTRPQFFSFPTPAAPLINTTARPISTVPSKLHTSHIQANTTNQSSSTSNSSASKSESVMAPISSSTVTTNGKTTKQMLREFSLEIYDKEELQFMSRSSERMKTE 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 41969 43006 - CmoCh17G000060.1 Cmo17g00006 400389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00006 345 MobiDBLite consensus disorder prediction 144 172 - -
Cmo17g00006 345 ProSiteProfiles TCP domain profile. 71 125 IPR017887 -
Cmo17g00006 345 MobiDBLite consensus disorder prediction 61 80 - -
Cmo17g00006 345 MobiDBLite consensus disorder prediction 158 172 - -
Cmo17g00006 345 PANTHER TRANSCRIPTION FACTOR TCP9 12 340 - -
Cmo17g00006 345 MobiDBLite consensus disorder prediction 1 17 - -
Cmo17g00006 345 MobiDBLite consensus disorder prediction 270 314 - -
Cmo17g00006 345 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 12 340 IPR005333 GO:0003700
Cmo17g00006 345 Pfam TCP family transcription factor 70 170 IPR017887 -
Cmo17g00006 345 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00162 Cmo-Chr16:737196 Cmo17g00006 Cmo-Chr17:41969 6.00E-61 dispersed
Cmo17g00006 Cmo-Chr17:41969 Cmo11g00159 Cmo-Chr11:799344 2.27E-37 dispersed
Cmo17g00006 Cmo-Chr17:41969 Cmo08g00907 Cmo-Chr8:5906079 1.00E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11352 PF03634 TCP 1.80E-30 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00006 - - cmax:111499026 582.408