Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00020 ATGAGTTTTGGGGGTTTCCTCGACGGCGGCGGCGGCGGAGGTGCTGGTGCTCGATTCGTAGCGGATTTACCTTACACAATTAACTCCACCACCAACAATAACCCCACCGGAGGCATCGGCGGTGGCGGAAATATATCCTCCGGCGCAATCGCTCCCCCGCGCCTCATCACTCAATCCCTCACCAAATCGATGTTCAACTCCCCTGGACTGTCTCTTGCTCTTACGAACATGGATGGCGGGCAGGGAGATTTAGCTGCCCGATTGCCCGAGGGTTTCGAGCATAATGTTGGAAGAAGAGGCAGAGAGGAAGAGCACGAGAGTAGATCTGGGAGTGACAACATGGACGGCGGCTCCGGCGATGACCAGGACGCTGCCGACAATCCTCCGAGGAAGAAGCGTTACCACCGACACACTCCTCAGCAAATCCAAGAGCTCGAAGCTGTTTTTAAAGAGTGCCCTCATCCTGATGAGAAACAACGCCTCGAGTTGAGTAGGAGGCTGTGTTTAGAAACTAGACAAGTTAAATTTTGGTTCCAAAACCGGAGGACCCAAATGAAGACCCAGTTGGAACGCCATGAGAATACTTTGCTTAGACAGGAGAATGATAAGCTTAGAGCTGAGAATATGTCGATTCGAGATGCTATGAGGAATCCAATCTGTTCGAATTGCGGCGGTCCGGCGATTATCGGAGAAATCTCGCTGGAAGAGCAGCAGTTAAGGATTGATAATGCTCGGTTGAAGGATGAGTTGGACCGGGTTTGTGCACTTGCTGGGAAGTTTCTCGGCAGACCAATTTTGTCACTGGCAAACTCCATTGCACCTCCATTGCCGAGCTCAAGTCTGGAACTGGGAGTTGGGAGTAATGGATTTGGTAGCTTGACCATGGCGACTTCAATGCCTATTGGACCGGATTTTGGAGGTGGGTTGTCGGGTAATCTGGCTGTCGTTCAGCCACCTGTGAGGCCAACACCGGGGACAGGACTTGATCGTTCAGTTGAACGATCTATGCTACTAGAGCTTGCTTTGGCTGCCATGGATGAATTGGTCAAAATGGCGCAGACTGATGAGCCACTTTGGATTGGGAGCTTGGAAGGTGGAAGAGAAATACTGAACCAGGAAGAATACATGAGGACATTCACTCCTTGCATTGGCATGAAATCGAATGGTTTCGTGACCGAGGCGTCGAGAGAAACTGGCATGGTGATCATCAACAGCTTGGCTCTTGTCGAGACATTGATGGACTCGAATCGATGGGCTGAGATGTTTCCATGTCTGATTGCTCGAACGACGACCATTGATGTGATCTCCAGTGGCATGGGGGGAAGTAGGAATGGTGCACTTCAACTGATGCACGCAGAGCTTCAAGTGCTCTCACCTTTGGTGCCAGTCCGGGAAGTCAGTTTTCTACGGTTCTGCAAGCAGCATGCCGAAGGGGTATGGGCAGTCGTGGACGTATCGGTTGATGCCATGAGAGAGACGCCAGCTGGTGGTGGTTCGCCATTCATCAACTGCAGAAGGCTTCCTTCTGGGTGTGTTGTACAAGACATGCCCAATGGGTATTCCAAGGTTACGTGGGTGGAACATGCAGACTACGATGATAGCCAAGTCCACCAGCTCTACCGTCCCCTACTCAGCTCCGGCATGGGCTTCGGAGCACAACGGTGGGTTGCCACCCTTCAACGGCAATGTGAATGCCTCGCCATTCTCATGTCATCAGCTGCTCCAATACGAGACCACACCGCCATAACTGCGGGCGGGAGGCGGAGCATGCTGAAGCTAGCGCAACGAATGACAGCCAACTTCTGCGCAGGCGTGTGTGCATCCACAGTGCACAAATGGAACAAGCTGAATGCCGGGAGCGTCGATGAGGACGTCCGTGTCATGACACGAAAGAGCGTGGACGATCCTGGGGAACCTCCAGGCATTGTGTTGAGTGCAGCTACGTCGGTATGGCTCCCGGTATCGCCCCAACGACTTTTTGATTTCCTCCGTGACGAGCGGCTGAGAAGTGAATGGGACATCCTATCCAACGGCGGCCCCATGCAGGAGATGGCTCATATCGCCAAAGGCCAAGATCATGGCAACTGCGTCTCTCTATTAAGAGCCAGCGCTATGAATGCGAACCAGAGCAGTATGTTGATTCTACAAGAGACATGCATAGACGCGGCCGGCTCCCTTGTGGTCTACGCGCCGGTCGACATTCCGGCAATGCACGTAGTGATGAATGGCGGCGATTCTGCGTACGTGGCGCTTTTGCCTTCAGGGTTTGCGATTGTGGCTGACGGCGCGGTGACAGGTGGGAGGAGTCCGAGTGGCGGGGAGGGAGGGCGGCAGGGCGAGAGAGGGACAGGCGGTGGGTCCCTTCTCACCGTGGCATTTCAAATCCTGGTGAATAGCCTCCCTACAGCGAAGCTCACCGTGGAATCGGTTGAAACAGTCAACAATCTCATCTCTTGCACCGTCCAGAAGATCAAGGCCGCTCTTCAATGCGAAACCTGA 2499 53.54 MSFGGFLDGGGGGGAGARFVADLPYTINSTTNNNPTGGIGGGGNISSGAIAPPRLITQSLTKSMFNSPGLSLALTNMDGGQGDLAARLPEGFEHNVGRRGREEEHESRSGSDNMDGGSGDDQDAADNPPRKKRYHRHTPQQIQELEAVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQQLRIDNARLKDELDRVCALAGKFLGRPILSLANSIAPPLPSSSLELGVGSNGFGSLTMATSMPIGPDFGGGLSGNLAVVQPPVRPTPGTGLDRSVERSMLLELALAAMDELVKMAQTDEPLWIGSLEGGREILNQEEYMRTFTPCIGMKSNGFVTEASRETGMVIINSLALVETLMDSNRWAEMFPCLIARTTTIDVISSGMGGSRNGALQLMHAELQVLSPLVPVREVSFLRFCKQHAEGVWAVVDVSVDAMRETPAGGGSPFINCRRLPSGCVVQDMPNGYSKVTWVEHADYDDSQVHQLYRPLLSSGMGFGAQRWVATLQRQCECLAILMSSAAPIRDHTAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAGSVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVADGAVTGGRSPSGGEGGRQGERGTGGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCET 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 89213 95097 + CmoCh17G000200.1 Cmo17g00020 400403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00020 832 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 76 830 - -
Cmo17g00020 832 SUPERFAMILY Homeodomain-like 113 188 IPR009057 -
Cmo17g00020 832 SMART HOX_1 129 192 IPR001356 GO:0003677
Cmo17g00020 832 CDD START_ArGLABRA2_like 334 564 - -
Cmo17g00020 832 MobiDBLite consensus disorder prediction 92 111 - -
Cmo17g00020 832 Coils Coil 182 214 - -
Cmo17g00020 832 ProSitePatterns 'Homeobox' domain signature. 163 186 IPR017970 GO:0000981|GO:0006355
Cmo17g00020 832 CDD homeodomain 130 188 IPR001356 GO:0003677
Cmo17g00020 832 ProSiteProfiles 'Homeobox' domain profile. 128 188 IPR001356 GO:0003677
Cmo17g00020 832 SUPERFAMILY Bet v1-like 332 565 - -
Cmo17g00020 832 Pfam START domain 339 565 IPR002913 GO:0008289
Cmo17g00020 832 Gene3D - 392 562 IPR023393 -
Cmo17g00020 832 Gene3D - 118 204 - -
Cmo17g00020 832 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 76 830 IPR042160 -
Cmo17g00020 832 Pfam Homeodomain 131 186 IPR001356 GO:0003677
Cmo17g00020 832 ProSiteProfiles START domain profile. 330 568 IPR002913 GO:0008289
Cmo17g00020 832 MobiDBLite consensus disorder prediction 91 138 - -
Cmo17g00020 832 SUPERFAMILY Bet v1-like 593 825 - -
Cmo17g00020 832 SMART START_1 339 565 IPR002913 GO:0008289
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo14g02074 Cmo17g00020 CCT
Cmo14g02074 Cmo17g00020 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01907 Cmo-Chr11:13249775 Cmo17g00020 Cmo-Chr17:89213 0 dispersed
Cmo14g02074 Cmo-Chr14:15106336 Cmo17g00020 Cmo-Chr17:89213 0 dispersed
Cmo16g00146 Cmo-Chr16:664145 Cmo17g00020 Cmo-Chr17:89213 0 dispersed
Cmo17g00020 Cmo-Chr17:89213 Cmo18g01257 Cmo-Chr18:12311482 0 dispersed
Cmo17g00020 Cmo-Chr17:89213 Cmo08g00893 Cmo-Chr8:5801325 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11353 PF01852 START 7.60E-59 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00020 K09338 - csv:101222248 1473.37