Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00030 ATGGATAGAATTACACCCCACACTCGCCCTCTTCCACCTCCTTTCCTCTCCAAAGATCTTCATCTCCACCACCGCCAAAACTCCGATGACGACCAAAGCGGCGGAGCTAAAAGGGATAGGGAGGAGGAAAATCCCATCACCGCACCGGAGACTAAAGAATTATCCAATTCTTCTTCTCGACGCCCACGTGGCCGACCAGCTGGTTCCAAAAACAAGCCAAAGCCACCCATTATAATCACTAGAGACAGCGCCAACGCCCTCAGATCTCATCTCATCGAAATCTCCACCGCCTCTGACATCGTGGATACCCTCGCCGCCTTCGGGCGTAGGCGTCAGCGCGGCGTTTGTATCTTAAGCGCCACTGGAACCGTCGCCAACGTCACTCTCCGACAGCCAGCCTCCCCCGCCGCTGTCATCTCCTTACATGGCAGATTTGAAATTCTCTCCCTATCCGGCTCCTTCCTCCCGCCGCCGGCTCCCCCTGCCGCCTCCGGGCTGACCGTCTACTTAGCCGGTGGGCAGGGGCAGGTCGTCGGCGGGAATGTCATCGGCCCACTTCTGGCGTCCGGTCCGGTGATTATTATGGCAGCTTCATTTGGAAATGCTGCATATGAACGGCTACCCATTGACGAGGAAGACGAAGCTTCACCCGCGGCGGAGATGGCGGGAGAACAGGCAGCACCGCCGCCGCCGCAATTGTTGGGGGATCCGAATGGGGGATTGTTTCATGGTGTGAATTCTTCATGCCAATTAGCGGCGGAGGCGGCGTATTGGGGAGGAGGTCGGCCACCGTTTTGA 798 57.77 MDRITPHTRPLPPPFLSKDLHLHHRQNSDDDQSGGAKRDREEENPITAPETKELSNSSSRRPRGRPAGSKNKPKPPIIITRDSANALRSHLIEISTASDIVDTLAAFGRRRQRGVCILSATGTVANVTLRQPASPAAVISLHGRFEILSLSGSFLPPPAPPAASGLTVYLAGGQGQVVGGNVIGPLLASGPVIIMAASFGNAAYERLPIDEEDEASPAAEMAGEQAAPPPPQLLGDPNGGLFHGVNSSCQLAAEAAYWGGGRPPF 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 135628 136425 - CmoCh17G000300.1 Cmo17g00030 400413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00030 265 Gene3D - 87 216 - -
Cmo17g00030 265 ProSiteProfiles PPC domain profile profile. 84 221 IPR005175 -
Cmo17g00030 265 SUPERFAMILY AF0104/ALDC/Ptd012-like 84 213 - -
Cmo17g00030 265 MobiDBLite consensus disorder prediction 1 78 - -
Cmo17g00030 265 CDD DUF296 88 199 IPR005175 -
Cmo17g00030 265 Pfam Plants and Prokaryotes Conserved (PCC) domain 88 200 IPR005175 -
Cmo17g00030 265 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 5 265 - -
Cmo17g00030 265 MobiDBLite consensus disorder prediction 49 64 - -
Cmo17g00030 265 MobiDBLite consensus disorder prediction 214 241 - -
Cmo17g00030 265 MobiDBLite consensus disorder prediction 18 48 - -
Cmo17g00030 265 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 5 265 IPR014476 GO:0003680
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01554 Cmo-Chr2:9006756 Cmo17g00030 Cmo-Chr17:135628 1.47E-90 dispersed
Cmo15g00111 Cmo-Chr15:536548 Cmo17g00030 Cmo-Chr17:135628 2.45E-59 dispersed
Cmo15g01236 Cmo-Chr15:8513916 Cmo17g00030 Cmo-Chr17:135628 7.54E-87 dispersed
Cmo17g00030 Cmo-Chr17:135628 Cmo14g02016 Cmo-Chr14:14758803 1.09E-68 dispersed
Cmo17g00030 Cmo-Chr17:135628 Cmo06g01155 Cmo-Chr6:8855557 1.56E-95 wgd
Cmo17g00030 Cmo-Chr17:135628 Cmo08g00918 Cmo-Chr8:5986572 6.06E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00030 - - csv:101220133 415.231