Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00031 ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCCCATGTGGGGCGTGCAAGTTTTTGAGAAGAAAGTGTATTCCTGGTTGCATATTTGCGCCGTACTTCGACTCGGAGCAAGGCGCTGGGCACTTCGCCGCGGTGCACAAGGTGTTTGGAGCCAGCAATGTGTCCAAGCTCCTCCTTCATATCCCGGTTCACAAGCGCCTCGATGCTGTCGTCACCATTTGCTACGAGTCTCAAGCCCGCCTTCGAGACCCTGTCTATGGCTGCGTCGCCCACATCTTCGCTCTCCAACGACAGGTGGTGAGTTTACAAGCCGAGCTGTCGTACCTTCAAGCTCATCTAGCAACGCTGGAGCTTCCGTCGCCGCCTCCGCCGCCAAATTTTGCGGTGCAACCACCGGTGTCCATCTCAGACCTGCCGTCGGCTTCCTCCCTACCGGTCACTTACGACTTGTCGTCCCTCTTTGACCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTCGACCATCGCCAGTTCTCCAGTGGTGGTGCTGGCGGTTCATCCACAACGGCGGGAGAGGGCGATCTTCAAGCCCTGGCCCGCGCACTCCTCCATAGACATGGCGGTCCGCCGTGCTCCGATGCCTCGTCGCCGCCATCGCTCTCTAAATGA 690 60.14 MSANPSTSGGGGGGGGGGGGGGPCGACKFLRRKCIPGCIFAPYFDSEQGAGHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQRQVVSLQAELSYLQAHLATLELPSPPPPPNFAVQPPVSISDLPSASSLPVTYDLSSLFDPMAQPAWAMQQQRLDHRQFSSGGAGGSSTTAGEGDLQALARALLHRHGGPPCSDASSPPSLSK 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 140116 141390 - CmoCh17G000310.1 Cmo17g00031 400414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00031 229 Pfam Lateral organ boundaries (LOB) domain 23 121 IPR004883 -
Cmo17g00031 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 4 215 - -
Cmo17g00031 229 MobiDBLite consensus disorder prediction 176 229 - -
Cmo17g00031 229 PANTHER LOB DOMAIN CONTAINING PROTEIN 4 215 - -
Cmo17g00031 229 ProSiteProfiles LOB domain profile. 22 124 IPR004883 -
Cmo17g00031 229 MobiDBLite consensus disorder prediction 177 200 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00921 Cmo17g00031 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00031 Cmo-Chr17:140116 Cmo19g00089 Cmo-Chr19:498897 9.13E-54 dispersed
Cmo17g00031 Cmo-Chr17:140116 Cmo17g00032 Cmo-Chr17:146651 5.98E-62 tandem
Cmo14g02043 Cmo-Chr14:14933551 Cmo17g00031 Cmo-Chr17:140116 8.82E-64 wgd
Cmo17g00031 Cmo-Chr17:140116 Cmo08g00921 Cmo-Chr8:6007802 2.38E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11354 PF03195 LOB 5.30E-37 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00031 K21994 - csv:101220603 355.91