Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo17g00032 | ATGAGTAGCGCCGGCGTCCACGGCGGAGGACCCTGCGGCGCGTGCAAGTTGTTGAGGAGAAAGTGTGTGAAAGGGTGCATATTTGCACCCTATTTCGACTCGGAACAAGGCGCCGCCGACTTCGCGGCGGTGCACAAGGTGTTTGGAGCTAGCAATGCCTCCAAACTCCTCCACCGCATCCCGGCAAACAAGCGGGTGGACGCGTGTGGTACCCTTTGTTATGAAGCTCTGGCTAGGGTTCGAGATCCTGTGTACGGCTGTGTTGCCCATATCTTCTCCCTTCAGCAACAGGTAGTGAGCCTGCAGGCAGAGCTAGCATACATTCAGGCCAAACTTTCCACATTGCAGCGGCTACTACCGCCACCGCTACACAGCCCGTCCTCGACTGCTCGCCACAATCCGCTCCCGGAAACCACCCCGGGCTCCGATATGGGTCTGCTGCCTAATGTTCGAATGCTCCTCGACCCGCTCCAAACACAGCTAGGTTGTAATGAAACGACGAGTAGCTTTCTGAACCCAATTGATCTTGAAGATGAGATGGAGGAAGATGGTGAGCTTCAATCTCTGGCTCGAGAGTTCGTTTCGAGGTATTTGCCCGGAGTAGGATTCCGGCCGCCGTGCTCTCAGATTTGA | 633 | 55.92 | MSSAGVHGGGPCGACKLLRRKCVKGCIFAPYFDSEQGAADFAAVHKVFGASNASKLLHRIPANKRVDACGTLCYEALARVRDPVYGCVAHIFSLQQQVVSLQAELAYIQAKLSTLQRLLPPPLHSPSSTARHNPLPETTPGSDMGLLPNVRMLLDPLQTQLGCNETTSSFLNPIDLEDEMEEDGELQSLAREFVSRYLPGVGFRPPCSQI | 210 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 146651 | 148694 | + | CmoCh17G000320.1 | Cmo17g00032 | 400415 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo17g00032 | 210 | Pfam | Lateral organ boundaries (LOB) domain | 11 | 109 | IPR004883 | - | |
Cmo17g00032 | 210 | ProSiteProfiles | LOB domain profile. | 10 | 112 | IPR004883 | - | |
Cmo17g00032 | 210 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 5 | 199 | - | - | |
Cmo17g00032 | 210 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 19 | 5 | 199 | - | - | |
Cmo17g00032 | 210 | MobiDBLite | consensus disorder prediction | 119 | 143 | - | - | |
Cmo17g00032 | 210 | MobiDBLite | consensus disorder prediction | 120 | 136 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g00921 | Cmo-Chr8:6007802 | Cmo17g00032 | Cmo-Chr17:146651 | 7.49E-62 | dispersed | |
Cmo14g02043 | Cmo-Chr14:14933551 | Cmo17g00032 | Cmo-Chr17:146651 | 2.39E-52 | dispersed | |
Cmo17g00032 | Cmo-Chr17:146651 | Cmo19g00089 | Cmo-Chr19:498897 | 1.54E-48 | dispersed | |
Cmo17g00031 | Cmo-Chr17:140116 | Cmo17g00032 | Cmo-Chr17:146651 | 5.98E-62 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11355 | PF03195 | LOB | 2.60E-36 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo17g00032 | - | - | csv:101220840 | 339.347 |