Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00032 ATGAGTAGCGCCGGCGTCCACGGCGGAGGACCCTGCGGCGCGTGCAAGTTGTTGAGGAGAAAGTGTGTGAAAGGGTGCATATTTGCACCCTATTTCGACTCGGAACAAGGCGCCGCCGACTTCGCGGCGGTGCACAAGGTGTTTGGAGCTAGCAATGCCTCCAAACTCCTCCACCGCATCCCGGCAAACAAGCGGGTGGACGCGTGTGGTACCCTTTGTTATGAAGCTCTGGCTAGGGTTCGAGATCCTGTGTACGGCTGTGTTGCCCATATCTTCTCCCTTCAGCAACAGGTAGTGAGCCTGCAGGCAGAGCTAGCATACATTCAGGCCAAACTTTCCACATTGCAGCGGCTACTACCGCCACCGCTACACAGCCCGTCCTCGACTGCTCGCCACAATCCGCTCCCGGAAACCACCCCGGGCTCCGATATGGGTCTGCTGCCTAATGTTCGAATGCTCCTCGACCCGCTCCAAACACAGCTAGGTTGTAATGAAACGACGAGTAGCTTTCTGAACCCAATTGATCTTGAAGATGAGATGGAGGAAGATGGTGAGCTTCAATCTCTGGCTCGAGAGTTCGTTTCGAGGTATTTGCCCGGAGTAGGATTCCGGCCGCCGTGCTCTCAGATTTGA 633 55.92 MSSAGVHGGGPCGACKLLRRKCVKGCIFAPYFDSEQGAADFAAVHKVFGASNASKLLHRIPANKRVDACGTLCYEALARVRDPVYGCVAHIFSLQQQVVSLQAELAYIQAKLSTLQRLLPPPLHSPSSTARHNPLPETTPGSDMGLLPNVRMLLDPLQTQLGCNETTSSFLNPIDLEDEMEEDGELQSLAREFVSRYLPGVGFRPPCSQI 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 146651 148694 + CmoCh17G000320.1 Cmo17g00032 400415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00032 210 Pfam Lateral organ boundaries (LOB) domain 11 109 IPR004883 -
Cmo17g00032 210 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
Cmo17g00032 210 PANTHER LOB DOMAIN CONTAINING PROTEIN 5 199 - -
Cmo17g00032 210 PANTHER LOB DOMAIN-CONTAINING PROTEIN 19 5 199 - -
Cmo17g00032 210 MobiDBLite consensus disorder prediction 119 143 - -
Cmo17g00032 210 MobiDBLite consensus disorder prediction 120 136 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00921 Cmo-Chr8:6007802 Cmo17g00032 Cmo-Chr17:146651 7.49E-62 dispersed
Cmo14g02043 Cmo-Chr14:14933551 Cmo17g00032 Cmo-Chr17:146651 2.39E-52 dispersed
Cmo17g00032 Cmo-Chr17:146651 Cmo19g00089 Cmo-Chr19:498897 1.54E-48 dispersed
Cmo17g00031 Cmo-Chr17:140116 Cmo17g00032 Cmo-Chr17:146651 5.98E-62 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11355 PF03195 LOB 2.60E-36 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00032 - - csv:101220840 339.347