Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00038 ATGGATGGACCAACTGGTCGTGGTGGTAGTGGCATGGATATGAATTTACCGAACTATAAACTTGGAAAGACCCTTGGCATAGGTTCATTTGGGAAAGTGAAAATTGCCGAGCATGCTTTAACTGGTCATAAAGTTGCTATTAAGATCCTTAACCGCCGAAAGATAAAAAATTTGGACATGGAAGAAAAAGTGAGAAGAGAGATTAAAATATTGAGGTTGTTCATGCATCCTCACATTATACGGCTCTATGAGGTTATAGAGACTCCAGCAGACATTTATGTTGTGATGGAGTATGTAAAATCTGGGGAGCTCTTTGATTATATTGTAGAAAAGGGAAGGTTGCAGGAAGATGAAGCCCGTAATTTTTTCCAACAGATAATCTCTGGTGTGGAGTACTGCCACAGGAATATGGTAGTTCACAGAGATCTCAAGCCGGAGAACTTGCTTTTAGACTCAAAATATAATGTGAAGATTGCTGATTTTGGTTTGAGCAATATAATGCGAGATGGTCACTTTCTGAAGACAAGTTGTGGGAGTCCCAATTATGCTGCCCCAGAGGTCATCTCCGGGAAATTATACGCTGGACCTGAAGTAGATGTGTGGAGTTGTGGTGTCATTTTGTATGCCCTTCTGTGTGGCACTCTTCCTTTTGACGATGAAAACATTCCCAACCTGTTTAAGAAAATAAAGGGTGGAATCTATACTCTTCCAAGTCATTTATCATCTGGTGCTAGAGAACTGATCCCTAGTATGCTGGTGGTTGACCCAATGAAGCGCATCACGATCCCTGAGATTCGCCAGCACCCATGGTTTCAGGCTCATCTTCCACGCTATTTAGCCGTGCCTCCACCTGATACAATTCAACAGGCGAAAAAGATTGATGAAGACATTCTTCAGGAAGTTGTAAAAATGGGATTTGACAGGAATCAGCTGGTGGAGTCTCTTCGTAACAGGATTCAAAATGAGGCTACTGTTGCTTATTATTTGTTGCTGGACAACCGGTTTCGTGTTTCTAGTGGCTATCTTGGAGCTGAGTTTCAGGAGACTATGGAAACCAGATTCAATTCTATGCACCCTGGTGATCCTACAAGTCCTGCTGTAGGACACCGGCTTCCTGGATATATGGATTATCAAGGAATGGGCCTAAGATCACAGTTTCCCGTTGAGAGGAAGTGGGCTCTAGGATTACAGTCTCGAGCTCATCCCCGTGAAATTATGACCGAAGTCCTCAAGGCCCTACGAGAGCTCAATGTGGCGTGGAAGAAGATTGGGCACTACAATATGAAATGTAGGTGGTTACCTGGAATTCCAGGCCATCATGAAGGCATGATTAACAGCCCTGTGCATAGTAATCATTACTTCGGGGACGAGTCTACCATCATTGAAAATGACGGCATAGTAAAATCGCCGAATGTTATTAAGTTCGAAGTTCAGCTGTACAAAACACGCGAAGAGAAGTATTTGCTTGATCTACAGAGGGTTCAAGGCCCCCAGTTTCTTTTCCTGGATCTTTGTGCTGCCTTCCTTGCGCAGCTCCGCGTCCTCTAA 1548 43.67 MDGPTGRGGSGMDMNLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPADIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKYNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSGARELIPSMLVVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTIQQAKKIDEDILQEVVKMGFDRNQLVESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETRFNSMHPGDPTSPAVGHRLPGYMDYQGMGLRSQFPVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGIPGHHEGMINSPVHSNHYFGDESTIIENDGIVKSPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 184901 192130 - CmoCh17G000380.1 Cmo17g00038 400421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00038 515 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Cmo17g00038 515 Pfam UBA/TS-N domain 293 329 IPR015940 -
Cmo17g00038 515 SUPERFAMILY KA1-like 328 514 IPR028375 -
Cmo17g00038 515 SMART uba_6 294 331 IPR015940 -
Cmo17g00038 515 Gene3D Kinase associated domain 1, KA1 395 513 - -
Cmo17g00038 515 Pfam Kinase associated domain 1 472 514 IPR001772 -
Cmo17g00038 515 ProSiteProfiles Protein kinase domain profile. 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00038 515 SUPERFAMILY UBA-like 281 330 IPR009060 GO:0005515
Cmo17g00038 515 Gene3D Transferase(Phosphotransferase) domain 1 11 352 - -
Cmo17g00038 515 PANTHER SERINE/THREONINE KINASE 8 514 - -
Cmo17g00038 515 SUPERFAMILY Protein kinase-like (PK-like) 16 289 IPR011009 -
Cmo17g00038 515 CDD STKc_AMPK_alpha 16 271 - -
Cmo17g00038 515 SMART serkin_6 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00038 515 CDD UBA_SnRK1_plant 293 333 - -
Cmo17g00038 515 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 292 332 IPR015940 -
Cmo17g00038 515 CDD AMPKA_C 389 512 - -
Cmo17g00038 515 Pfam Protein kinase domain 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00038 515 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 466 514 IPR001772 -
Cmo17g00038 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Cmo17g00038 515 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 514 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00889 Cmo-Chr2:5486584 Cmo17g00038 Cmo-Chr17:184901 1.20E-41 dispersed
Cmo17g00038 Cmo-Chr17:184901 Cmo02g01223 Cmo-Chr2:7357307 8.05E-91 dispersed
Cmo11g01031 Cmo-Chr11:5646044 Cmo17g00038 Cmo-Chr17:184901 7.25E-14 transposed
Cmo11g01032 Cmo-Chr11:5652371 Cmo17g00038 Cmo-Chr17:184901 0 transposed
Cmo17g00038 Cmo-Chr17:184901 Cmo08g00929 Cmo-Chr8:6049608 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74988 PF00069 Pkinase 2.00E-80 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00038 K07198 - csv:101211720 1000.73