Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00043 ATGAAATTGGAGAAGTATTTAGATTTGGAGAGAAACGAGGAGCAGAGTTTCTCTCTCTTCGAATCCTCTCCACAGGTTGTTGCGCTCTCCCTTCACCAGCAAGCATTCAGCAATTTCTTCATCAGATCTACACTCTCCACCGCCCTCATTCTCAGGTTTGCCTCTTCTCTTTCTCAACGCCGATTCTCGATCACTTTCTCCTTCCTGTTGAACATGCCATCGGCTCAAGATCCGTTCTATGTTGTAAAAGACGAGATTCAAGAATCTATTGATAAAGTGCAATCCAGCTTTCACCAATGGGAAAGGATATCTTCTGATCCAGGAGAGAGAGCACAACAAACAAAAGAGTTGCTCGCTTCCTGTGAGAGTATTGAATGGCAGGTTGGAAATGTTAAGAAAGTAGTAGGAGCTGGAAAGGAGCAAACTGGAACTGCTAGTGCAAGTGGGATGCGTCGAGAATTGATGAGACTACCCAATGCACTTGAAACAGAAAAATCAAACTTATATACAGCCCACCAAGAAAATGATGACTTCGTCTCATCCGAATCAGATAGACAGCTGCTTCTAATAAGAATCCTCCTGCTTAAGTGGAAACCTATCTCTAAATTAAGTATGATGATGAAGTACAAGAATAACATAATAAAATTTATAGTAGAGTACTTGTTAACTCACCTGGATTTTGATCCCCTGCAGCAGGACGAGGAGTTGGATGAATTGAGTGCGAGTGTGGTGAGAATTGGAGGTGTTGGGCTCACAATACATGAAGAGCTCCTTGCACAGGATAAAATTATTGACAACCTAGGAATGGAAATGGACAGTACATCGAATCGTCTTGATTTTGTTCAGAAAAAAGTAGCTGTGGTGATGAAGAAGGCCAGCGCCAAGGGGCAGATAATGATGATATTATTCTTGGTAGCTTTGTTCATCATCCTTTTTGTGTTGTTTATCAATATTGCTATTGGATCTCATAATCGTGTAGGGTTGATGAGGAAGTAA 996 41.37 MKLEKYLDLERNEEQSFSLFESSPQVVALSLHQQAFSNFFIRSTLSTALILRFASSLSQRRFSITFSFLLNMPSAQDPFYVVKDEIQESIDKVQSSFHQWERISSDPGERAQQTKELLASCESIEWQVGNVKKVVGAGKEQTGTASASGMRRELMRLPNALETEKSNLYTAHQENDDFVSSESDRQLLLIRILLLKWKPISKLSMMMKYKNNIIKFIVEYLLTHLDFDPLQQDEELDELSASVVRIGGVGLTIHEELLAQDKIIDNLGMEMDSTSNRLDFVQKKVAVVMKKASAKGQIMMILFLVALFIILFVLFINIAIGSHNRVGLMRK 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 213771 218059 - CmoCh17G000430.1 Cmo17g00043 400426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00043 331 PANTHER SYNTAXIN 133 191 IPR045242 -
Cmo17g00043 331 SUPERFAMILY t-snare proteins 76 138 IPR010989 GO:0016020|GO:0016192
Cmo17g00043 331 Pfam SNARE domain 263 314 IPR000727 -
Cmo17g00043 331 PANTHER SYNTAXIN PROTEIN 133 191 - -
Cmo17g00043 331 PANTHER SYNTAXIN PROTEIN 72 136 - -
Cmo17g00043 331 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 226 288 IPR000727 -
Cmo17g00043 331 PANTHER SYNTAXIN PROTEIN 230 315 - -
Cmo17g00043 331 CDD SNARE_Qc 231 286 - -
Cmo17g00043 331 Gene3D - 233 297 - -
Cmo17g00043 331 Pfam Syntaxin 6, N-terminal 77 139 IPR015260 GO:0016020|GO:0048193
Cmo17g00043 331 Gene3D - 73 185 - -
Cmo17g00043 331 SMART tSNARE_6 221 288 IPR000727 -
Cmo17g00043 331 PANTHER SYNTAXIN 72 136 IPR045242 -
Cmo17g00043 331 PANTHER SYNTAXIN 230 315 IPR045242 -
Cmo17g00043 331 SUPERFAMILY SNARE fusion complex 224 288 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00984 Cmo-Chr1:6509852 Cmo17g00043 Cmo-Chr17:213771 1.15E-78 dispersed
Cmo01g00985 Cmo-Chr1:6518283 Cmo17g00043 Cmo-Chr17:213771 1.57E-07 dispersed
Cmo01g01156 Cmo-Chr1:9455895 Cmo17g00043 Cmo-Chr17:213771 7.13E-09 dispersed
Cmo17g00043 Cmo-Chr17:213771 Cmo09g00974 Cmo-Chr9:5158698 1.13E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00043 K08500 - csv:101212527 284.263