Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00057 ATGGCTACTTTAAACTTAGGCTCAGCTTCTCACTTTGTTGACCAGCTTCAACAACGCCCTGATCTCCACTTAGATTCGCCGCCCAGCTCCGATCATGTCACCAATCTCAACCACTTCAACGGCAGCGGCGGCTCCGGTGGTAGCGGAGATGCTATGGTTCGTCGACCTAGGGGTCGCCCAGCCGGGTCCAAGAACAAGCCAAAGCCACCCGTGATCATCACGCGCGAGAGCGCTAATACCCTCCGAGCTCATATCTTGGAAATCGGTAGCGGATATGATGTGTTCGAGGCTGTGGCTGGCTATGCGCGACGGCGACAACGGGGGATCTGTGTGTTGAGTGGAAGTGGGATAGTGAATAATGTTAGCTTACGACAACCGGCTGCGGCTGGATCCGTGTTGACGTTACAAGGGAGGTTTGAGATTTTGTCCCTATCGGGATCATTCTTACCACCACCTGCTCCACCAGGTGCTACTAGTCTCACGATTTTCTTGGCCGGAGGTCAAGGACAAGTGGTCGGAGGGAATGTCGTGGGAGCTTTGATTGCGTCGGGGCCTGTTATCGTTATAGCATCGTCGTTCAGTAACGTTGCATACGAGAGGCTACCGTTGGATGAAGAAGAATTGTCGATGCCTGCAGCTGGTGGTGACGGAGATGGAGGCGAGGGCGGGGGCGGGGGCGGTGATGGCCACGACAACCCTTTTCCCGACGGATCTTCGGGTTTGCCCTTTCTAAATCTGCCTATGAATATGCCAAATCAGAATCAATTTTTTGGTTGA 777 53.8 MATLNLGSASHFVDQLQQRPDLHLDSPPSSDHVTNLNHFNGSGGSGGSGDAMVRRPRGRPAGSKNKPKPPVIITRESANTLRAHILEIGSGYDVFEAVAGYARRRQRGICVLSGSGIVNNVSLRQPAAAGSVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGALIASGPVIVIASSFSNVAYERLPLDEEELSMPAAGGDGDGGEGGGGGGDGHDNPFPDGSSGLPFLNLPMNMPNQNQFFG 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 290693 291796 + CmoCh17G000570.1 Cmo17g00057 400440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00057 258 MobiDBLite consensus disorder prediction 22 44 - -
Cmo17g00057 258 SUPERFAMILY AF0104/ALDC/Ptd012-like 78 210 - -
Cmo17g00057 258 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 195 IPR005175 -
Cmo17g00057 258 PIRSF ESCAROLA 2 256 IPR014476 GO:0003680
Cmo17g00057 258 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 255 - -
Cmo17g00057 258 Gene3D - 81 211 - -
Cmo17g00057 258 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 255 IPR014476 GO:0003680
Cmo17g00057 258 MobiDBLite consensus disorder prediction 20 71 - -
Cmo17g00057 258 MobiDBLite consensus disorder prediction 209 245 - -
Cmo17g00057 258 CDD DUF296 82 165 IPR005175 -
Cmo17g00057 258 ProSiteProfiles PPC domain profile profile. 78 214 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01004 Cmo17g00057 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01651 Cmo-Chr2:9524324 Cmo17g00057 Cmo-Chr17:290693 1.43E-84 dispersed
Cmo16g01202 Cmo-Chr16:8602724 Cmo17g00057 Cmo-Chr17:290693 9.75E-89 dispersed
Cmo17g00057 Cmo-Chr17:290693 Cmo19g00257 Cmo-Chr19:1873601 7.41E-88 dispersed
Cmo14g02016 Cmo-Chr14:14758803 Cmo17g00057 Cmo-Chr17:290693 1.19E-99 wgd
Cmo17g00057 Cmo-Chr17:290693 Cmo08g00948 Cmo-Chr8:6171397 8.04E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00057 - - csv:101203160 418.313