Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00086 ATGGTGAAGAAACGTGTGCCGGATTGGCTCAATAGCTCTCTCTGGTCCTCCACTCCTGTTGACGACGATCGCCTCCACCGCTACACTTCGGAGCCGGCCACCACCACGTCGTCGCCGGAACCCGTCGTTGAACCTCCGGTTCCGGTTCCTCCTCCGTCTGCGAGCACCGTCGTTAGAACAGAGTCTCCCAAGTCGGATACTAGAGACTCCAGGGTTAATAACAATGTGAGCAACGACGATAATGACACTTCTTCAGGTCCTTCTGCTGAGGACGTATCTCGCCAGGCACAGCTTCTCGTTGAGTTGTCAAAGAAGGTCATAAATCTGCGTGAATTGCGTAAAATTGCGTCTCAGGGCATACCGGATGGTCCAGGAATTCGTTCAACCGTCTGGAAACTCCTATTGGGTTATCTGCCACCAGATCGTGCGCTCTGGACGTCTGAGTTGGCTAAAAAGAGGTCTCAATACAAGCATTTCAAAGAAGAGCTTTTGATGAATCCCTCAGAAATTTCAAGGAGGTTGGAGAAAGCGAAAAGTTACGAGCATGATGAAACGAACAGAGGTCCACTCTCAAGGTCAGAAATAAGTCAAGAGGAACATCCTTTGAGTCTTGGGAAAACCAGCATTTGGAATCAGTACTTCCAGGAGGCTCTGAGAAACATCTTAATTGTATTTGCAAAGTTGAATCCAGGAATTAGATATGTTCAAGGGATGAATGAAATTTTAGCTCCTCTATTCTATGTATTTAGAAGTGATCCTGATGAGGATAATGCGGCATCTGCTGAAGCAGACACGTTCTTTTGCTTTGTTGAGTTGTTGAGTGGATTTAGGGATCATTTCTGCCAGCAATTGGATAATAGTGTTGTGGGAATTCGCGCCACAATCACAAAGTTGTCTCAACTTCTGAAGGAGCATGATGAAGAGCTCTGGCGTCACCTTGAGATCACAACCAAGGTAAATCCCCAGTTTTATGCATTTAGGTGGATCACTCTCCTCTTGACCCAGGAGTTCAATTTTGCAGACAGCCTTCATATATGGGATACAATTTTGAGTGATCCTGAGGGTCCTCTGGCAAATGCTTTACGCTTGTATTTGTCGTGCATTCGGAACACTCTCGAGGCCGCTATGTGCCTTCAGAATTTTCCTTGTCAAGAAGTTGAAAGACACAACAAGCCAGAGGTTGAACTAAAGACCAGCTCAGAACTTATTCTCAATCCTGTTAAACAGACAGATGAACTGGAGAACATCCTCACTAAAAAGTTCCTACGATTTCTGTCAATGAGGGCAGAAGCTTTCCAGGTGCTGAGAAGAAAACCTGTACAGGGATACGACATTAGCTTTCTCATAACAAACTATCATTGTGAGGAGCTGCAGAAGCAAAAGCTCATTGATTTTATTGATATTGATAAAGAGATTAGTGAACTTAAAATGTCCGTGAACACTCGGGGAAGGCTTGTAGCAACAGAGTTTCTAAAGCAATTCATTTGA 1488 44.83 MVKKRVPDWLNSSLWSSTPVDDDRLHRYTSEPATTTSSPEPVVEPPVPVPPPSASTVVRTESPKSDTRDSRVNNNVSNDDNDTSSGPSAEDVSRQAQLLVELSKKVINLRELRKIASQGIPDGPGIRSTVWKLLLGYLPPDRALWTSELAKKRSQYKHFKEELLMNPSEISRRLEKAKSYEHDETNRGPLSRSEISQEEHPLSLGKTSIWNQYFQEALRNILIVFAKLNPGIRYVQGMNEILAPLFYVFRSDPDEDNAASAEADTFFCFVELLSGFRDHFCQQLDNSVVGIRATITKLSQLLKEHDEELWRHLEITTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTILSDPEGPLANALRLYLSCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELILNPVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEELQKQKLIDFIDIDKEISELKMSVNTRGRLVATEFLKQFI 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 452012 461618 + CmoCh17G000860.1 Cmo17g00086 400469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00086 495 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 214 365 - -
Cmo17g00086 495 SUPERFAMILY Arp2/3 complex subunits 360 494 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Cmo17g00086 495 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 168 281 - -
Cmo17g00086 495 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 290 356 IPR035969 -
Cmo17g00086 495 Gene3D - 90 145 - -
Cmo17g00086 495 Gene3D - 289 406 - -
Cmo17g00086 495 MobiDBLite consensus disorder prediction 1 92 - -
Cmo17g00086 495 Gene3D - 407 494 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Cmo17g00086 495 MobiDBLite consensus disorder prediction 69 92 - -
Cmo17g00086 495 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 100 312 IPR035969 -
Cmo17g00086 495 MobiDBLite consensus disorder prediction 39 53 - -
Cmo17g00086 495 SMART tbc_4 116 381 IPR000195 -
Cmo17g00086 495 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 3 213 - -
Cmo17g00086 495 Pfam ARP2/3 complex 20 kDa subunit (ARPC4) 358 407 IPR008384 GO:0005885|GO:0015629|GO:0030041|GO:0034314
Cmo17g00086 495 Pfam ARP2/3 complex 20 kDa subunit (ARPC4) 407 493 IPR008384 GO:0005885|GO:0015629|GO:0030041|GO:0034314
Cmo17g00086 495 ProSiteProfiles TBC/rab GAP domain profile. 121 353 IPR000195 -
Cmo17g00086 495 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 3 213 - -
Cmo17g00086 495 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 214 365 - -
Cmo17g00086 495 Pfam Rab-GTPase-TBC domain 126 368 IPR000195 -
Cmo17g00086 495 MobiDBLite consensus disorder prediction 176 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00086 K24796 TBC1D13; TBC1 domain family member 13 - csv:101208456 633.254
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01461 Cmo-Chr14:11845226 Cmo17g00086 Cmo-Chr17:452012 7.53E-26 dispersed
Cmo17g00086 Cmo-Chr17:452012 Cmo08g00245 Cmo-Chr8:1490278 4.05E-16 dispersed
Cmo17g00086 Cmo-Chr17:452012 Cmo08g00977 Cmo-Chr8:6359138 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g997 . . Bda03g01131 . Bpe04g01074 . Bma04g01171 . . Cmo17g00086 . . . . . . . . . . . . . . Cla06g00785 Cam06g0840 Cec06g0855 Cco06g0869 Clacu06g0843 Cmu06g0815 Cre06g1595 . . . . . Csa02g00897 . . . . . . . . . . . . . . Cma17g00079 . Car17g00073 Cpe12g00073 . Bhi12g01466 . . . . . Lcy13g0479 . . . . . . . Lsi09g01113 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004668 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 0 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00086 Cmo_Chr17 FPKM 6.081432 7.081861 8.071569 8.520787 6.31145 5.346421 5.955029 9.258051 10.037243 10.27061