Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00087 ATGGCGGACGTCTTAGGCGACGCCGGTGGCGGCGGAACCAAGGCCACAAAGCTTCCGATTCCAGGAAAGAGGAATATACTCATTACCAGCGCTCTTCCATACGTCAATAACGTTCCTCACCTCGGCAACATCATTGGCTGTGTGTTGAGTGCTGATGTTTTTGCTCGGTACTGTCGTCTTAGAGGTTATAACGCTATTTACATATGCGGAACCGATGAGTATGGAACGGCGACGGAGACAAAAGCAATGGAAGAGAAATGTTCTCCTAAAGAGATTTGTGACAAGTACCACAAAATTCACAAAGAAGTTTACGATTGGTTTGGTATTAGTTTTGATGAATTTGGTCGCACATCATCATCACAGCAGACTGAAGTTTGTCAAGAAATATTTGGAAAACTATTGGAGAACAATTGGCTTTCTGAGAACACGATGCTACAGCTGTACTGTGATACTTGTGAGAGATTTTTAGCCGATCGGCTCGTTGAAGGCATCTGTCCTACTCCAGGTTGTGAGTATGACTCTGCACGTGGTGATCAATGTGAAAAGTGCGGGAAACTTCTTAATCCAACGGAGTTGAAAGATCCCAGGTGCAAGGTCTGTCAAACAACCCCACGTATCCGTGACACAAACCACATGTTTCTTGAACTTCCTTTGCTGAGAGATAAACTTGAAGAATATATCAACAAGATGTCTGTGGCTGGATCTTGGAGCCAAAATGCTATTCAAGCAACACAAGCTTGGCTTAAGGAAGGGTTGAAACCCCGGTGTATTACAAGAGATCTAAAGTGGGGGGTTCCCGTTCCACTTGAAAGGTTCAGGGACAAGGTCTTCTATGTTTGGTTTGATGCCCCAATAGGATATGTCTCCATTACATCATGCTACACAAATGAATGGGAGAAATGGTGGAAGAATCCAGAGAATGTGGAGCTTTTTCAATTCATGGGCAAGGATAATGTTCCTTTCCACACTGTTATGTTTCCTTCTACACTGCTCGGAACTGGAGAAGACTGGACCTTGATGAAAACCATTAGTGTTACTGAATACTTAAACTATGAAGCAGGAAAATTTTCTAAGAGTAAGGGCATTGGAGTTTTTGGTAATGATGCAAAAGATACAAATATTTCTGCAGAAGTATGGAGATATTACTTATTAGCCAATAGGCCTGAGGTTTCAGATACATTATTTACATGGGCTGATTTACAAGCAAAACTCAATGGCGAGTTGTTGAACAATTTGGGCAACTTCATTCATCGAGTTTTGAGCTTCGTTGCCAAACCTTTAGGGCAGGGTTATGGTTCCATAATTCCTGATGCACCTAACGCGGACTCTCATGGATTAACATTGGTTTTGGCTGAAAAAGTTGGTAAATACGTAGACCAATATGTGGAATCAATGGAGAAGGTTAAACTAAAACAAGGTCTAAAAGCTGCAATGGCTATTTCAAACGAGGGAAATACATATTTGCAAACATCCCAGTTCTGGAATCTTTACAAGGCGGACAAACCTTCGTGCAATATTGTTATGAGAACTTCAACTGGACTTGTGCATCTTCTGGCATGTTTATTAGAACCTTTCATGCCTTCTTTCTCAGATGAGGTGTTTAGGCAGCTGGATTTACCTCTGGAACGGCGTATTTCGCTTTGTGAAGAGAAAGGAGACATCGAGAGAGCAAAGCAACCTTGGAAGACTCTACCTTCTGGTCATAAGATTGGCACACCACAACCTTTATTCAAAGAATTGAAAGACGAAGAAGTAGAACTATACAGAGACAAGTTTGCCGGAAGTCAGGCTCAACGCATTGTTAAAGCAGAAGCAGAAAAGCTTGCTGCTCACCTAAAAAAAACTAACGTTTCAGGCAGTGAAAAAAAGCAACAGGCAAAATCCTCCACAGGCCGCAAACCGAAAGCTGCTGCTGGTGGTGGTGCGGTGGAAGCAGGAATTACGATAACAAGACTGGATATACGAGTAGGATTAATTACTAAAGCTCAGAAGCATCCTGATGCTGATTCCCTATATGTGGAAGAAATCGATGTGGGAGAAGCGCAGCCTCGAACCGTTGTCAGTGGACTGGTCAACTACATACCTCTTCAAGAGATGCAGAACCGGAAGGTCTGTGTTCTTTGCAACTTGAAGCCGGCTTCCATGAGGGGAATTAAATCGCAAGCCATGGTTCTGGCTGCTTCCAATAGCGACCACACCAAGGTTGAATTAGTCGAGCCACCCAAAGACGCCAATGTCGGAGAAAGAATAAAATTCCCAGGATTCGAAGGCGAGCCCGAGGACGTACTAAACCCGAAGAAAAAGGTATGGGAGACGCTGCAAGTGGATTTGGCTATCAACACAGAGGGGGTGGCATGTTTTAAAGATATACCATTTAACACGTCGGCTGGCATTTGCAAAGTTCCTTCCATTACCAGTGGCTCTATCTGGTAG 2433 43.44 MADVLGDAGGGGTKATKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEEKCSPKEICDKYHKIHKEVYDWFGISFDEFGRTSSSQQTEVCQEIFGKLLENNWLSENTMLQLYCDTCERFLADRLVEGICPTPGCEYDSARGDQCEKCGKLLNPTELKDPRCKVCQTTPRIRDTNHMFLELPLLRDKLEEYINKMSVAGSWSQNAIQATQAWLKEGLKPRCITRDLKWGVPVPLERFRDKVFYVWFDAPIGYVSITSCYTNEWEKWWKNPENVELFQFMGKDNVPFHTVMFPSTLLGTGEDWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDAKDTNISAEVWRYYLLANRPEVSDTLFTWADLQAKLNGELLNNLGNFIHRVLSFVAKPLGQGYGSIIPDAPNADSHGLTLVLAEKVGKYVDQYVESMEKVKLKQGLKAAMAISNEGNTYLQTSQFWNLYKADKPSCNIVMRTSTGLVHLLACLLEPFMPSFSDEVFRQLDLPLERRISLCEEKGDIERAKQPWKTLPSGHKIGTPQPLFKELKDEEVELYRDKFAGSQAQRIVKAEAEKLAAHLKKTNVSGSEKKQQAKSSTGRKPKAAAGGGAVEAGITITRLDIRVGLITKAQKHPDADSLYVEEIDVGEAQPRTVVSGLVNYIPLQEMQNRKVCVLCNLKPASMRGIKSQAMVLAASNSDHTKVELVEPPKDANVGERIKFPGFEGEPEDVLNPKKKVWETLQVDLAINTEGVACFKDIPFNTSAGICKVPSITSGSIW 810
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 462714 470840 - CmoCh17G000870.1 Cmo17g00087 400470

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00087 810 Pfam Putative tRNA binding domain 654 748 IPR002547 GO:0000049
Cmo17g00087 810 Gene3D - 648 810 IPR012340 -
Cmo17g00087 810 SUPERFAMILY Nucleic acid-binding proteins 650 808 IPR012340 -
Cmo17g00087 810 Pfam tRNA synthetases class I (M) 26 420 IPR015413 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cmo17g00087 810 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 33 44 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cmo17g00087 810 CDD MetRS_core 25 395 IPR033911 GO:0004825|GO:0006431
Cmo17g00087 810 SUPERFAMILY Methionyl-tRNA synthetase (MetRS), Zn-domain 161 197 IPR029038 -
Cmo17g00087 810 ProSiteProfiles tRNA-binding domain profile. 648 751 IPR002547 GO:0000049
Cmo17g00087 810 MobiDBLite consensus disorder prediction 612 640 - -
Cmo17g00087 810 CDD Anticodon_Ia_Met 404 537 IPR041872 -
Cmo17g00087 810 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 412 592 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cmo17g00087 810 CDD tRNA_bind_EMAP-II_like 647 750 - -
Cmo17g00087 810 Hamap Methionine--tRNA ligase [metG]. 24 591 IPR023458 GO:0004825
Cmo17g00087 810 Pfam Anticodon binding domain of methionyl tRNA ligase 449 596 IPR041872 -
Cmo17g00087 810 Gene3D - 161 197 IPR029038 -
Cmo17g00087 810 Gene3D - 409 579 - -
Cmo17g00087 810 PRINTS Methionyl-tRNA synthetase signature 28 41 IPR033911 GO:0004825|GO:0006431
Cmo17g00087 810 PRINTS Methionyl-tRNA synthetase signature 61 75 IPR033911 GO:0004825|GO:0006431
Cmo17g00087 810 PRINTS Methionyl-tRNA synthetase signature 109 120 IPR033911 GO:0004825|GO:0006431
Cmo17g00087 810 PRINTS Methionyl-tRNA synthetase signature 277 288 IPR033911 GO:0004825|GO:0006431
Cmo17g00087 810 PRINTS Methionyl-tRNA synthetase signature 312 327 IPR033911 GO:0004825|GO:0006431
Cmo17g00087 810 PRINTS Methionyl-tRNA synthetase signature 407 418 IPR033911 GO:0004825|GO:0006431
Cmo17g00087 810 TIGRFAM metG: methionine--tRNA ligase 26 562 IPR014758 GO:0000166|GO:0004825|GO:0005524|GO:0006431
Cmo17g00087 810 PANTHER METHIONINE--TRNA LIGASE CYTOPLASMIC 13 809 - -
Cmo17g00087 810 SUPERFAMILY Nucleotidylyl transferase 23 405 - -
Cmo17g00087 810 Gene3D HUPs 25 408 IPR014729 -
Cmo17g00087 810 PANTHER METHIONINE--TRNA LIGASE 13 809 IPR023458 GO:0004825
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00087 K01874 MARS, metG; methionyl-tRNA synthetase [EC:6.1.1.10] - csv:101208697 1458.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02753 Cmo-Chr4:19927008 Cmo17g00087 Cmo-Chr17:462714 2.60E-47 dispersed
Cmo07g01413 Cmo-Chr7:8117543 Cmo17g00087 Cmo-Chr17:462714 4.08E-39 dispersed
Cmo04g00100 Cmo-Chr4:528786 Cmo17g00087 Cmo-Chr17:462714 6.84E-48 transposed
Cmo17g00087 Cmo-Chr17:462714 Cmo08g00976 Cmo-Chr8:6349782 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g991 . Blo12g00110 Bda03g01132 . Bpe04g01075 . Bma04g01170 . . Cmo17g00087 . . . . . . . . . . . . . . Cla06g00784 Cam06g0838 Cec06g0853 Cco06g0867 Clacu06g0841 Cmu06g0813 Cre06g1593 . . . . . Csa02g00898 . . . . . . . . . . . . . . Cma17g00080 . Car17g00074 Cpe12g00074 . Bhi12g01467 . . . . . . . . . . . . . Lsi09g01114 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003190 3 1 3 3 3 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 2 2 1 3 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00087 Cmo_Chr17 FPKM 49.062454 54.834373 9.985662 10.559706 73.875145 67.523422 70.701797 7.164822 7.922915 7.300766