Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00092 ATGTCGCGCTGCTTTCCATTTCCGCCACCGGGATATGAAAAGAAGTCTAGGGCTGAGGATGCGGACCTACTAAAAAAGGAGAAAAGCAAAGAAAAAAAGCATAAAAAGGAGAAGAGGGAGGGTAAAGAAAAAAGAGATAAGGATAAAAGTGATGAGAAACGCCGTGAAAAGAAAGAAAAAAAGAAAGACAAAGACAAAGACAGGGACAGGGACAAGAAGAAGGATAGGGATAAGGAGAAGGAGAGTCGACCTTCGGGGAAAACTGGGAATCAAAATGGGGAGGCGGTTGTTCGAGTCAAACATAACAGTGTCGAAGACGAGAAGCATACTGCGCAACTCGATTCGTGCATTGGAAATAAGATTAGTCAGAATGCCTTTTTTCCTAAGGAGACGAAGAATTCAAAAACGGTGCAGGAGGTGGGGAGGAGAATTGAGGACGGTGGAGCTGCAAAGCTCGGGAAACTTGCAGTTGCACAACCGAAAAAGGACGACAGAATGGCCACACAGATGGCTAGGAATTCCGAGACCATGTTTGAAGGCATGGAACACAACAAGAACAAGAAAATTGATGAAAGAAACTACAATGGTCAAGGAATTAGACACGAGGAAAGGTTTAGTGGAAATTCCACGATCCCGAGTTCCACCACAACCGCAACTGCAACTGTTGAATCTGGAGTTGCAGGAATGGTTAAACAATTGGATAAAAGTGCCGAGAGAAAGAAAGAAGCAAACGATAAAATCGGACCGAAAGAAGGTGAAGAAAAACGAGGGAGCAAACACAAGGATAAAGATAAAGAGAAGAAAGGACGACGGGACGATAAAGAGAAGAAAAAGGAAAAGAAAGCGAAGAAGGCGGAAGAGAAGAACGCCATGGTAGATAAAACGAAAGAGATCAGTAAGGATAACGTATTAGGTAGACTTTCTACGAATACGAATACATCACAGCTTGCTGACAGCAACATAGGTGCTGCAGTTGAGGAAAACTTGATTAAGAAACGGAAGGATTTTGAGCCTAATGGAGTGTTGCATGAAATCGACAACAGACCGAGTAAGTTGTCGAGACCCGCTTCTCATCCATTGAAAGAAAATGGTAGGATACTGGAACCGTGCTCGATTTCCCCGTCGCCACCTCCTTCAGAGAGACAGGCTTTGGGAAATGACGTTATTTTGGTTGGTAAAGAACGGAAGATTAATGGCGTCATTGACGCTCACCACCCACCTGCGTCTTCGAAACACAAGTCGGGCGGCCAAGACGATCATCCTCAACCTACTGCAACACCTAAAAGATCTCCCCATCCAGATTCGAAGCTCTTGAGCCAGGTATATTCAGTGCCCAAAATGGAGGAATTGTCTGATTCTGATAACCAAGATTGGTTATTTAGCAGCAGCAAACCCAAGTTAGAAGCTTCAGCGATGGCTGAGGATACGTCGCAGGTATGGGCCGAGGCAATCCAGATAGACTCGGTTGACGTTTTTGCTCTTCCTTACGTTATTCCGTACTGA 1503 44.71 MSRCFPFPPPGYEKKSRAEDADLLKKEKSKEKKHKKEKREGKEKRDKDKSDEKRREKKEKKKDKDKDRDRDKKKDRDKEKESRPSGKTGNQNGEAVVRVKHNSVEDEKHTAQLDSCIGNKISQNAFFPKETKNSKTVQEVGRRIEDGGAAKLGKLAVAQPKKDDRMATQMARNSETMFEGMEHNKNKKIDERNYNGQGIRHEERFSGNSTIPSSTTTATATVESGVAGMVKQLDKSAERKKEANDKIGPKEGEEKRGSKHKDKDKEKKGRRDDKEKKKEKKAKKAEEKNAMVDKTKEISKDNVLGRLSTNTNTSQLADSNIGAAVEENLIKKRKDFEPNGVLHEIDNRPSKLSRPASHPLKENGRILEPCSISPSPPPSERQALGNDVILVGKERKINGVIDAHHPPASSKHKSGGQDDHPQPTATPKRSPHPDSKLLSQVYSVPKMEELSDSDNQDWLFSSSKPKLEASAMAEDTSQVWAEAIQIDSVDVFALPYVIPY 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 497373 504726 - CmoCh17G000920.1 Cmo17g00092 400475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00092 500 MobiDBLite consensus disorder prediction 177 314 - -
Cmo17g00092 500 MobiDBLite consensus disorder prediction 402 418 - -
Cmo17g00092 500 MobiDBLite consensus disorder prediction 13 28 - -
Cmo17g00092 500 MobiDBLite consensus disorder prediction 202 223 - -
Cmo17g00092 500 PANTHER MYB-LIKE PROTEIN X 1 500 - -
Cmo17g00092 500 MobiDBLite consensus disorder prediction 41 85 - -
Cmo17g00092 500 MobiDBLite consensus disorder prediction 402 439 - -
Cmo17g00092 500 Coils Coil 24 45 - -
Cmo17g00092 500 MobiDBLite consensus disorder prediction 178 199 - -
Cmo17g00092 500 MobiDBLite consensus disorder prediction 341 383 - -
Cmo17g00092 500 MobiDBLite consensus disorder prediction 1 96 - -
Cmo17g00092 500 Coils Coil 277 297 - -
Cmo17g00092 500 MobiDBLite consensus disorder prediction 233 301 - -
Cmo17g00092 500 PANTHER MYB-LIKE PROTEIN X 1 500 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00092 - - - csv:101207823 550.436
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo14g01963 Cmo17g00092 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01963 Cmo-Chr14:14486633 Cmo17g00092 Cmo-Chr17:497373 1.30E-27 wgd
Cmo17g00092 Cmo-Chr17:497373 Cmo08g00969 Cmo-Chr8:6286015 2.21E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g928 . Blo12g00103 Bda03g01140 . Bpe04g01083 . . . . Cmo17g00092 . Cma14g01909 . . Sed02g1530 . Cpe03g01609 Bhi01g00196 Tan10g0491 Cmetu06g0292 Lac12g2013 Hepe05g1778 . Lcy11g1793 Cla06g00774 Cam06g0824 Cec06g0839 Cco06g0845 Clacu06g0827 Cmu06g0799 Cre06g1581 Cone14ag0246 Cone15ag0264 . . Lsi05g01861 . Chy05g00576 Cme06g00365 . . . . . . . . Sed09g0171 . Cmo14g01963 . Cma17g00086 . Car17g00081 Cpe12g00079 . Bhi12g01479 Tan06g2285 Cmetu05g0427 . . . . Cla05g00329 Cam05g0359 Cec05g0363 Cco05g0365 Clacu05g0356 Cmu05g0341 Cre05g0404 Lsi09g01125 Csa03g01075 Chy06g00345 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005452 2 2 0 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00092 Cmo_Chr17 FPKM 0.514613 0.576032 1.865192 1.707261 0.776113 1.45858 1.050601 0.444719 0.664175 0.373126