Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo17g00098 | ATGGCCTCGACTTCTTTTGCTGGCAGGAAGCAACTGCCAGTGATTGAAGCTACTTCTAGCTGTATACCATACCCACCACCGCAAACAACATATGAGGATATTGTAGCTAATCCAAATATCTTTATGGCATCCTTGGAGAAGCTCCATTCTGTCATGGGAACCAAGTTCATGATCCCGATTATTGGTGGGAAAGAACTAGACCTGCATCGACTTTTCGTGGAAGTTACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAATTTCCCTTCAACGGCCACCAATGCCTCTTTCGTTCTCAGGAAGTATTATCTTTCGTTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCAATAATTTCTGATTCCTCTCCGTGCCCAAGTGCAGCGACGATTCCTACCCAAGGGACGGCCTCTATGTTGCCACCATCAGATAATCAGGCGGCGTCCCAGCCGCCACGGAGTACTGCAACTGAACTTCCAGCAGTTGCTCCGGGTTCGACATCTCCAGCAGGAGGGTTTCCAGTGATCGGAGTCATTGACGGGAAATTTGATAGCGGATATCTTATTACTGTTACTGTAGGGACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCTGAGCAACCTGCTCAGCCTGTTGGTGTTTTTGCCAAAGATGGTACACCAAATGCTCATCAGCTTCGCCGTCGGAAGAAATCTGAGATAAGACGAAGGGATCCCGGTCATCCGAAGCCAAACAGAAGCGGCTACAACTTCTTCTTTGCTGAGCAGCATGCTAGACTCAAACCATTACACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGACCTTTGGAATAAACTTAAAGAGTCTGAAAGAACAGTTTACCAGGAGAAAGCTATGAAAGATAAAGAACGATACAGAGTCGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGCCAAGTCATCAGTGATGCAGTGCCTTTACAGCAGCGTCTTCCCGAGCCAGACCTGAACATGGTCTATGCTGACAAGAACGAAGAAACGGAGGATGGCGACTCTCCACAAACCCCAGATAACGATACAAGCTATGTTGAAGGCAACTCCGGAGAGTATAAAATGGAAGTGAAGGAGGAGGATGAAGAGGAGGAAGAGGAGGAAGAGGAGGAAGATGCATCTCCGAAAGGAATTGTTATTGTGGAGGATGTTAACGCTTTGGTCGAGGAGGAACAGTGCAAGACGGGAACAGCCGAAGAGGATGTTAGAAAAGAGAGTAGCACGGTTGGGGACGATAAAGAAGTTTATGCCGGGGAGTCGGTAATGATGGAGGTGGATGCAAAGGAAGAACCAGAACCAACAACAGACATTCGAGAAAATTAA | 1422 | 46.69 | MASTSFAGRKQLPVIEATSSCIPYPPPQTTYEDIVANPNIFMASLEKLHSVMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPIISDSSPCPSAATIPTQGTASMLPPSDNQAASQPPRSTATELPAVAPGSTSPAGGFPVIGVIDGKFDSGYLITVTVGTEKLKGVLYQAPSEQPAQPVGVFAKDGTPNAHQLRRRKKSEIRRRDPGHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRVEMEDYREKLRTGQVISDAVPLQQRLPEPDLNMVYADKNEETEDGDSPQTPDNDTSYVEGNSGEYKMEVKEEDEEEEEEEEEEDASPKGIVIVEDVNALVEEEQCKTGTAEEDVRKESSTVGDDKEVYAGESVMMEVDAKEEPEPTTDIREN | 473 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 534796 | 539268 | + | CmoCh17G000980.1 | Cmo17g00098 | 400481 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo17g00098 | 473 | Coils | Coil | 383 | 403 | - | - | |
Cmo17g00098 | 473 | MobiDBLite | consensus disorder prediction | 390 | 406 | - | - | |
Cmo17g00098 | 473 | SMART | bright_3 | 36 | 127 | IPR001606 | GO:0003677 | |
Cmo17g00098 | 473 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 261 | 328 | IPR009071 | - | |
Cmo17g00098 | 473 | SUPERFAMILY | ARID-like | 32 | 138 | IPR036431 | GO:0003677 | |
Cmo17g00098 | 473 | Pfam | HMG (high mobility group) box | 261 | 328 | IPR009071 | - | |
Cmo17g00098 | 473 | Gene3D | High mobility group box domain | 244 | 339 | IPR036910 | - | |
Cmo17g00098 | 473 | ProSiteProfiles | ARID domain profile. | 35 | 126 | IPR001606 | GO:0003677 | |
Cmo17g00098 | 473 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 15 | 5 | 402 | - | - | |
Cmo17g00098 | 473 | MobiDBLite | consensus disorder prediction | 342 | 412 | - | - | |
Cmo17g00098 | 473 | Coils | Coil | 310 | 330 | - | - | |
Cmo17g00098 | 473 | MobiDBLite | consensus disorder prediction | 147 | 183 | - | - | |
Cmo17g00098 | 473 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 5 | 402 | - | - | |
Cmo17g00098 | 473 | Pfam | ARID/BRIGHT DNA binding domain | 41 | 122 | IPR001606 | GO:0003677 | |
Cmo17g00098 | 473 | SUPERFAMILY | HMG-box | 254 | 333 | IPR036910 | - | |
Cmo17g00098 | 473 | CDD | ARID_HMGB9-like | 37 | 122 | IPR045303 | GO:0003677 | |
Cmo17g00098 | 473 | CDD | HMGB-UBF_HMG-box | 261 | 325 | - | - | |
Cmo17g00098 | 473 | SMART | hmgende2 | 260 | 329 | IPR009071 | - | |
Cmo17g00098 | 473 | MobiDBLite | consensus disorder prediction | 229 | 268 | - | - | |
Cmo17g00098 | 473 | Gene3D | - | 29 | 129 | IPR036431 | GO:0003677 | |
Cmo17g00098 | 473 | MobiDBLite | consensus disorder prediction | 147 | 179 | - | - | |
Cmo17g00098 | 473 | MobiDBLite | consensus disorder prediction | 426 | 446 | - | - | |
Cmo17g00098 | 473 | SMART | ARID_2 | 32 | 122 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g00997 | Cmo-Chr8:6460455 | Cmo17g00098 | Cmo-Chr17:534796 | 0 | dispersed | |
Cmo14g00611 | Cmo-Chr14:3089146 | Cmo17g00098 | Cmo-Chr17:534796 | 1.36E-09 | dispersed | |
Cmo17g00098 | Cmo-Chr17:534796 | Cmo06g00165 | Cmo-Chr6:869789 | 1.35E-06 | dispersed | |
Cmo17g00098 | Cmo-Chr17:534796 | Cmo09g00078 | Cmo-Chr9:365833 | 6.25E-92 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11358 | PF01388 | ARID | 1.40E-17 | CL0123 | Cmo | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo17g00098 | - | - | bhj:120068345 | 787.334 |