Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00098 ATGGCCTCGACTTCTTTTGCTGGCAGGAAGCAACTGCCAGTGATTGAAGCTACTTCTAGCTGTATACCATACCCACCACCGCAAACAACATATGAGGATATTGTAGCTAATCCAAATATCTTTATGGCATCCTTGGAGAAGCTCCATTCTGTCATGGGAACCAAGTTCATGATCCCGATTATTGGTGGGAAAGAACTAGACCTGCATCGACTTTTCGTGGAAGTTACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAATTTCCCTTCAACGGCCACCAATGCCTCTTTCGTTCTCAGGAAGTATTATCTTTCGTTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCAATAATTTCTGATTCCTCTCCGTGCCCAAGTGCAGCGACGATTCCTACCCAAGGGACGGCCTCTATGTTGCCACCATCAGATAATCAGGCGGCGTCCCAGCCGCCACGGAGTACTGCAACTGAACTTCCAGCAGTTGCTCCGGGTTCGACATCTCCAGCAGGAGGGTTTCCAGTGATCGGAGTCATTGACGGGAAATTTGATAGCGGATATCTTATTACTGTTACTGTAGGGACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCTGAGCAACCTGCTCAGCCTGTTGGTGTTTTTGCCAAAGATGGTACACCAAATGCTCATCAGCTTCGCCGTCGGAAGAAATCTGAGATAAGACGAAGGGATCCCGGTCATCCGAAGCCAAACAGAAGCGGCTACAACTTCTTCTTTGCTGAGCAGCATGCTAGACTCAAACCATTACACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGACCTTTGGAATAAACTTAAAGAGTCTGAAAGAACAGTTTACCAGGAGAAAGCTATGAAAGATAAAGAACGATACAGAGTCGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGCCAAGTCATCAGTGATGCAGTGCCTTTACAGCAGCGTCTTCCCGAGCCAGACCTGAACATGGTCTATGCTGACAAGAACGAAGAAACGGAGGATGGCGACTCTCCACAAACCCCAGATAACGATACAAGCTATGTTGAAGGCAACTCCGGAGAGTATAAAATGGAAGTGAAGGAGGAGGATGAAGAGGAGGAAGAGGAGGAAGAGGAGGAAGATGCATCTCCGAAAGGAATTGTTATTGTGGAGGATGTTAACGCTTTGGTCGAGGAGGAACAGTGCAAGACGGGAACAGCCGAAGAGGATGTTAGAAAAGAGAGTAGCACGGTTGGGGACGATAAAGAAGTTTATGCCGGGGAGTCGGTAATGATGGAGGTGGATGCAAAGGAAGAACCAGAACCAACAACAGACATTCGAGAAAATTAA 1422 46.69 MASTSFAGRKQLPVIEATSSCIPYPPPQTTYEDIVANPNIFMASLEKLHSVMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPIISDSSPCPSAATIPTQGTASMLPPSDNQAASQPPRSTATELPAVAPGSTSPAGGFPVIGVIDGKFDSGYLITVTVGTEKLKGVLYQAPSEQPAQPVGVFAKDGTPNAHQLRRRKKSEIRRRDPGHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRVEMEDYREKLRTGQVISDAVPLQQRLPEPDLNMVYADKNEETEDGDSPQTPDNDTSYVEGNSGEYKMEVKEEDEEEEEEEEEEDASPKGIVIVEDVNALVEEEQCKTGTAEEDVRKESSTVGDDKEVYAGESVMMEVDAKEEPEPTTDIREN 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 534796 539268 + CmoCh17G000980.1 Cmo17g00098 400481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00098 473 Coils Coil 383 403 - -
Cmo17g00098 473 MobiDBLite consensus disorder prediction 390 406 - -
Cmo17g00098 473 SMART bright_3 36 127 IPR001606 GO:0003677
Cmo17g00098 473 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 261 328 IPR009071 -
Cmo17g00098 473 SUPERFAMILY ARID-like 32 138 IPR036431 GO:0003677
Cmo17g00098 473 Pfam HMG (high mobility group) box 261 328 IPR009071 -
Cmo17g00098 473 Gene3D High mobility group box domain 244 339 IPR036910 -
Cmo17g00098 473 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Cmo17g00098 473 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 5 402 - -
Cmo17g00098 473 MobiDBLite consensus disorder prediction 342 412 - -
Cmo17g00098 473 Coils Coil 310 330 - -
Cmo17g00098 473 MobiDBLite consensus disorder prediction 147 183 - -
Cmo17g00098 473 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 5 402 - -
Cmo17g00098 473 Pfam ARID/BRIGHT DNA binding domain 41 122 IPR001606 GO:0003677
Cmo17g00098 473 SUPERFAMILY HMG-box 254 333 IPR036910 -
Cmo17g00098 473 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Cmo17g00098 473 CDD HMGB-UBF_HMG-box 261 325 - -
Cmo17g00098 473 SMART hmgende2 260 329 IPR009071 -
Cmo17g00098 473 MobiDBLite consensus disorder prediction 229 268 - -
Cmo17g00098 473 Gene3D - 29 129 IPR036431 GO:0003677
Cmo17g00098 473 MobiDBLite consensus disorder prediction 147 179 - -
Cmo17g00098 473 MobiDBLite consensus disorder prediction 426 446 - -
Cmo17g00098 473 SMART ARID_2 32 122 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00997 Cmo-Chr8:6460455 Cmo17g00098 Cmo-Chr17:534796 0 dispersed
Cmo14g00611 Cmo-Chr14:3089146 Cmo17g00098 Cmo-Chr17:534796 1.36E-09 dispersed
Cmo17g00098 Cmo-Chr17:534796 Cmo06g00165 Cmo-Chr6:869789 1.35E-06 dispersed
Cmo17g00098 Cmo-Chr17:534796 Cmo09g00078 Cmo-Chr9:365833 6.25E-92 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11358 PF01388 ARID 1.40E-17 CL0123 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00098 - - bhj:120068345 787.334