Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00098 ATGGCCTCGACTTCTTTTGCTGGCAGGAAGCAACTGCCAGTGATTGAAGCTACTTCTAGCTGTATACCATACCCACCACCGCAAACAACATATGAGGATATTGTAGCTAATCCAAATATCTTTATGGCATCCTTGGAGAAGCTCCATTCTGTCATGGGAACCAAGTTCATGATCCCGATTATTGGTGGGAAAGAACTAGACCTGCATCGACTTTTCGTGGAAGTTACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAATTTCCCTTCAACGGCCACCAATGCCTCTTTCGTTCTCAGGAAGTATTATCTTTCGTTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCAATAATTTCTGATTCCTCTCCGTGCCCAAGTGCAGCGACGATTCCTACCCAAGGGACGGCCTCTATGTTGCCACCATCAGATAATCAGGCGGCGTCCCAGCCGCCACGGAGTACTGCAACTGAACTTCCAGCAGTTGCTCCGGGTTCGACATCTCCAGCAGGAGGGTTTCCAGTGATCGGAGTCATTGACGGGAAATTTGATAGCGGATATCTTATTACTGTTACTGTAGGGACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCTGAGCAACCTGCTCAGCCTGTTGGTGTTTTTGCCAAAGATGGTACACCAAATGCTCATCAGCTTCGCCGTCGGAAGAAATCTGAGATAAGACGAAGGGATCCCGGTCATCCGAAGCCAAACAGAAGCGGCTACAACTTCTTCTTTGCTGAGCAGCATGCTAGACTCAAACCATTACACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGACCTTTGGAATAAACTTAAAGAGTCTGAAAGAACAGTTTACCAGGAGAAAGCTATGAAAGATAAAGAACGATACAGAGTCGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGCCAAGTCATCAGTGATGCAGTGCCTTTACAGCAGCGTCTTCCCGAGCCAGACCTGAACATGGTCTATGCTGACAAGAACGAAGAAACGGAGGATGGCGACTCTCCACAAACCCCAGATAACGATACAAGCTATGTTGAAGGCAACTCCGGAGAGTATAAAATGGAAGTGAAGGAGGAGGATGAAGAGGAGGAAGAGGAGGAAGAGGAGGAAGATGCATCTCCGAAAGGAATTGTTATTGTGGAGGATGTTAACGCTTTGGTCGAGGAGGAACAGTGCAAGACGGGAACAGCCGAAGAGGATGTTAGAAAAGAGAGTAGCACGGTTGGGGACGATAAAGAAGTTTATGCCGGGGAGTCGGTAATGATGGAGGTGGATGCAAAGGAAGAACCAGAACCAACAACAGACATTCGAGAAAATTAA 1422 46.69 MASTSFAGRKQLPVIEATSSCIPYPPPQTTYEDIVANPNIFMASLEKLHSVMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPIISDSSPCPSAATIPTQGTASMLPPSDNQAASQPPRSTATELPAVAPGSTSPAGGFPVIGVIDGKFDSGYLITVTVGTEKLKGVLYQAPSEQPAQPVGVFAKDGTPNAHQLRRRKKSEIRRRDPGHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRVEMEDYREKLRTGQVISDAVPLQQRLPEPDLNMVYADKNEETEDGDSPQTPDNDTSYVEGNSGEYKMEVKEEDEEEEEEEEEEDASPKGIVIVEDVNALVEEEQCKTGTAEEDVRKESSTVGDDKEVYAGESVMMEVDAKEEPEPTTDIREN 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 534796 539268 + CmoCh17G000980.1 Cmo17g00098 400481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00098 473 Coils Coil 383 403 - -
Cmo17g00098 473 MobiDBLite consensus disorder prediction 390 406 - -
Cmo17g00098 473 SMART bright_3 36 127 IPR001606 GO:0003677
Cmo17g00098 473 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 261 328 IPR009071 -
Cmo17g00098 473 SUPERFAMILY ARID-like 32 138 IPR036431 GO:0003677
Cmo17g00098 473 Pfam HMG (high mobility group) box 261 328 IPR009071 -
Cmo17g00098 473 Gene3D High mobility group box domain 244 339 IPR036910 -
Cmo17g00098 473 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Cmo17g00098 473 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 5 402 - -
Cmo17g00098 473 MobiDBLite consensus disorder prediction 342 412 - -
Cmo17g00098 473 Coils Coil 310 330 - -
Cmo17g00098 473 MobiDBLite consensus disorder prediction 147 183 - -
Cmo17g00098 473 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 5 402 - -
Cmo17g00098 473 Pfam ARID/BRIGHT DNA binding domain 41 122 IPR001606 GO:0003677
Cmo17g00098 473 SUPERFAMILY HMG-box 254 333 IPR036910 -
Cmo17g00098 473 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Cmo17g00098 473 CDD HMGB-UBF_HMG-box 261 325 - -
Cmo17g00098 473 SMART hmgende2 260 329 IPR009071 -
Cmo17g00098 473 MobiDBLite consensus disorder prediction 229 268 - -
Cmo17g00098 473 Gene3D - 29 129 IPR036431 GO:0003677
Cmo17g00098 473 MobiDBLite consensus disorder prediction 147 179 - -
Cmo17g00098 473 MobiDBLite consensus disorder prediction 426 446 - -
Cmo17g00098 473 SMART ARID_2 32 122 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00098 - - - bhj:120068345 787.334
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00997 Cmo-Chr8:6460455 Cmo17g00098 Cmo-Chr17:534796 0 dispersed
Cmo14g00611 Cmo-Chr14:3089146 Cmo17g00098 Cmo-Chr17:534796 1.36E-09 dispersed
Cmo17g00098 Cmo-Chr17:534796 Cmo06g00165 Cmo-Chr6:869789 1.35E-06 dispersed
Cmo17g00098 Cmo-Chr17:534796 Cmo09g00078 Cmo-Chr9:365833 6.25E-92 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo17g00098 . 1 358 ARID Transcription Factor Family AT1G04880 56.5 7.3e-106 381.7
Cmo08g00997 . 45 384 ARID Transcription Factor Family AT1G04880 59.7 5.8e-103 372.1
Cmo06g00165 . 1576 1847 ARID Transcription Factor Family AT1G20910 59.7 1.0e-87 321.2
Cmo01g02101 . 144 452 ARID Transcription Factor Family AT1G20910 53.4 9.0e-76 281.6
Cmo09g00078 CST 16 315 ARID Transcription Factor Family AT1G76110 67.1 1.2e-113 407.1
Cmo01g02054 CST 16 363 ARID Transcription Factor Family AT1G76110 58.4 2.5e-106 382.9
Cmo06g00165 . 1567 1876 ARID Transcription Factor Family AT1G76510 60.3 1.9e-103 373.6
Cmo01g02101 . 143 482 ARID Transcription Factor Family AT1G76510 58.8 1.5e-95 347.4
Cmo01g00019 CCT,ECH 1 771 ARID Transcription Factor Family AT3G43240 59.1 6.0e-262 901.0
Cmo14g01244 . 1 781 ARID Transcription Factor Family AT3G43240 58.2 3.6e-259 891.7
Cmo17g00636 CCT,ECH 2 771 ARID Transcription Factor Family AT3G43240 56.6 5.1e-253 871.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11358 PF01388 ARID 1.40E-17 CL0123 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00098 Cmo_Chr17 FPKM 5.729598 6.208523 1.662282 1.466648 11.782251 8.740149 11.338845 1.386577 1.09966 0.775698