Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00105 ATGGGTAAGGAAAAGATTCATATTAACATCGTGGTTATTGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGTCATCTTATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATCGAGAGATTCGAGAAGGAAGCTGCTGAGATGAACAAAAGGTCATTCAAGTATGCTTGGGTGCTCGACAAACTTAAGGCAGAGCGTGAACGTGGTATTACCATTGACATTGCTCTGTGGAAGTTTGAGACCACCAAGTACTACTGTACAGTCATCGATGCCCCCGGACATCGTGACTTTATCAAGAACATGATTACTGGTACCTCACAGGCTGATTGTGCCGTCCTTATTATTGACTCCACCACTGGTGGTTTTGAAGCTGGTATTTCCAAGGATGGACAGACCCGTGAGCACGCTCTCCTTGCTTTCACCCTTGGTGTCAAGCAAATGATCTGTTGCTGCAACAAGATGGATGCTACCACTCCCAAATACTCAAAGGCTAGGTATGATGAAATCGTCAAGGAAGTGTCATCTTACCTGAAGAAGGTTGGATACAACCCTGACAAAATTCCATTCGTTCCCATCTCTGGATTTGAGGGTGACAACATGATTGAGAGGTCCACCAACCTCGACTGGTACAAGGGACCAACCCTCCTTGAGGCCCTTGACTTGATCTCTGAGCCCAAGAGGCCCTCAGACAAGCCCCTCCGTCTCCCACTTCAGGACGTTTACAAGATCGGTGGTATTGGAACTGTCCCTGTCGGTCGTGTTGAGACTGGTGTCCTCAAGCCTGGTATGGTTGTCACCTTCGGACCAACTGGACTGACCACTGAAGTTAAGTCTGTTGAAATGCACCACGAGTCTCTCCCAGAGGCTTTGCCTGGTGACAATGTTGGGTTCAACGTTAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTCGTTGCCTCAAACTCCAAGGATGACCCAGCAAAGGAAGCTGCCAACTTCACCTCCCAGGTTATCATCATGAACCACCCTGGCCAGATTGGTAACGGTTACGCCCCAGTCCTTGATTGCCACACCTCCCACATTGCTGTTAAGTTTGCCGAGATCCTCACCAAGATTGATCGTCGATCCGGTAAGGAACTTGAGAAGGAGCCCAAGTTCTTGAAGAACGGAGATGCTGGTATGGTTAAGATGATTCCCACCAAGCCCATGGTTGTGGAGACCTTCTCCTCATACCCACCATTGGGTCGTTTTGCCGTCCGGGACATGCGTCAAACCGTTGCTGTTGGTGTGATCAAGAGCGTGGAGAAGAAGGACCCAACGGGAGCCAAGGTGACCAAGTCCGCCGTCAAGAAGAAATAA 1344 49.4 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLISEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHESLPEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKSAVKKK 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 566104 569047 - CmoCh17G001050.1 Cmo17g00105 400488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00105 447 Gene3D Translation factors 229 316 - -
Cmo17g00105 447 Pfam Elongation factor Tu C-terminal domain 322 429 IPR004160 -
Cmo17g00105 447 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Cmo17g00105 447 CDD EF1_alpha_II 230 320 - -
Cmo17g00105 447 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Cmo17g00105 447 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Cmo17g00105 447 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Cmo17g00105 447 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Cmo17g00105 447 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Cmo17g00105 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Cmo17g00105 447 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Cmo17g00105 447 Pfam Elongation factor Tu GTP binding domain 7 221 IPR000795 GO:0003924|GO:0005525
Cmo17g00105 447 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Cmo17g00105 447 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Cmo17g00105 447 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 446 - -
Cmo17g00105 447 Gene3D - 1 226 IPR027417 -
Cmo17g00105 447 CDD EF1_alpha_III 323 426 - -
Cmo17g00105 447 SUPERFAMILY Translation proteins 231 321 IPR009000 -
Cmo17g00105 447 CDD EF1_alpha 9 227 - -
Cmo17g00105 447 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 433 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cmo17g00105 447 PANTHER TRANSLATION FACTOR 1 446 - -
Cmo17g00105 447 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cmo17g00105 447 Gene3D Translation factors 323 430 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00989 Cmo-Chr8:6436558 Cmo17g00105 Cmo-Chr17:566104 0 dispersed
Cmo15g00448 Cmo-Chr15:2040074 Cmo17g00105 Cmo-Chr17:566104 0 dispersed
Cmo15g00449 Cmo-Chr15:2044595 Cmo17g00105 Cmo-Chr17:566104 0 dispersed
Cmo17g00105 Cmo-Chr17:566104 Cmo20g00507 Cmo-Chr20:2423378 0 dispersed
Cmo17g00105 Cmo-Chr17:566104 Cmo02g00876 Cmo-Chr2:5316708 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00105 K03231 - csv:101215193 894.034