Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00106 ATGAAGCTGAACCGTCTCTGTTTTCTTCTACCGGCGGACTTCGATGAAGTCCAGCCACTTGATCGCGAAGAGCTTCATGAACTCAACGACAATCACAGCCACAACAAACATCAGAACAAACAGGATCACAATCAAGATAGTTGGTCTCAATTTCAAGCCTTACTCCGAGATTCCCTTCACAAAATCCATAACCTGAAATGGGTTAATTCTTGTTGCTACGGCGGCAGACCCAGAAACCCACCACCGTCCGAGTTTCACGACACCGATGGGGTACACCTTTCTGAGAAACTCGGCGGCGACAACCCAAGAATCTTCAGCTTTGCAGAGCTCTATATTGGAACCAAAGGATTCAGTGCAGAGGAAATTCTTGGTAGTGGTGGATTTGGGAAGGTTTACAGAGCATATTTGCCTAGTGATGGAACTATGGCGGCTGTGAAATGTTTGGCTGAAAAAGGGGAGAAGTTTGAGAAGACGTTTGTGGCGGAGCTGGTGGCGGTTGCCCATCTCCGACACCGGAATCTTGTCCGGCTCCGTGGTTGGTGTGTTCATGAAGACCAATTGTTCATTGTTTATGATTATATGCCCAACCGAAGCTTGGACAGAGTACTTTTCCGGCGGCCGGAGAACGGCGGGACGGATCTTAGTTGGAAACAGAGAGTGAAGATTGTGAGAGGCTTGGCTGCTGCTCTGTTCTATCTTCATGAACAATTAGAGACACAGATTATTCACAGAGATGTTAAAACCAGCAACGTCATGCTTGATTCCAATTACAACGCTAAGCTTGGTGATTTTGGTTTGGCAAGGTGGTTGGAGCATGATCTTGAGTACCAAAACAGCGTGCCGTCGATGAGCCACCACCAGTTCCGGCTGGTGGAAACCACCAAAATTGGCGGCACAATTGGGTATCTCCCACCGGAGAGTTTTCAAAGAAGAAGCATTGCCACTGCAAAATCCGATGTTTTCAGCTTTGGTATTGTTCTTCTTGAGATGGTCTCTGGTCGGCGAGCAGTGGACCTTACATGTCCTGATGATCAGATTGTGTTGCTTGATTGGTTTCGAAAGCTCTCCGACGATGGAATGCCGCTGCTCGGCGGCGATAACCGGCTGCCAGATGGGTCTTATAATCTGATTGAAATGGAGCGTTTGATCCATTTGGGTCTCCTCTGTACACTCCAAAGCCCTCTGTATAGACCAAATATGAAGTGGGTTGTGGAAGCCCTTTCCGGTGGTATGAATTTGCCGGCGCTTCCATCATTTCAGTCTCATCCTCAGTACATTTCTCTATCTTCCACCACCAATGGCAGCACTACCAGAAGCACTAGCAGTAGCAGAACCACAGCAACAACAATAACAGTTAGTTCATCAGATTTCGTATCAGCCAATGGAGAAACCATATATATGACAGCTGAGAGTGGGAACAACTACACCAACTCTTCTGATAAGCTTCTTGACAGAACAAAAACTTTTCAAATGATTGACAATCCAAGAGTAATATCATTCAAGGAGATCATTTCAGCCACCAATAACTTCTCCGACTCGCAGCGGGTGGCGGAGCTGGACTTCGGAACTGCCTACCATGGCTTCCTTGACAGCAGCCACCATGTTCTAGTGAAGCGCCTTGGAATGAAGACATGCCCTGCATTACGGGAACGATTCTCGAATGAACTCGAAAACTTGGGCCGTCTTCGCCATAGAAACTTGATACAGCTTCGTGGATGGTGCACAGAGCAAGGGGAGATGCTTGTGGTATATGATTATTCAGCAGACCGTCTCTTGAGCCACCTGCTTTTCCAGCATGACAATAGATCTTTACAATGGTGTCATAGATACAACATTATCAAATCTCTGGCTTCAGCAATTCTTTATCTTCATGAGGAATGGGATGAACAAGTCATCCACAAGAACATCACCTCATCAGCTGTCATTCTTGATATTGATCTTAACCCAAAGCTGAGTTCTTTCGCCCTTGCAGAATTCCTGACAAGAAATGAGCACGGTAATCATCATGTAACCATAGATAAAAGCAAATCGGTTCGCGGGATTTTCGGGTACATGTCCCCCGAGTATTTAGACTCGGGAGATGCAGCAGCGACAGCTGATGTATACAGCTTTGGTGTAGTCGTTCTAGAGGTGATTACTGGTCAGATGGCCGTCGATTTTCGACGGCCAGAGGTATTGCTGGTGAGGAAGGTCCATGAATTCCACACCCGGAAAAGATCACTGGAAGAACTTGCTGATATAAGGCTGAATGGAGAATACAACCACAAAGAACTGACGAGAATGTTGAGATTAGGTGTGGCATGTACTCACTCAAACCCAGATTTAAGACCAAAAATGAGGCAGATAGTTAAAATACTCGATGGCAATGATCAATGCTTCCCTAAAGAAGAAAAAATGGAGAGCCTAGAAGGTTGGAAGCAAAGAAATGCAACTTCTTTGTCACTGGTTAGGAGGATCCAAGCTCTGGGAATACAGTGA 2478 46.13 MKLNRLCFLLPADFDEVQPLDREELHELNDNHSHNKHQNKQDHNQDSWSQFQALLRDSLHKIHNLKWVNSCCYGGRPRNPPPSEFHDTDGVHLSEKLGGDNPRIFSFAELYIGTKGFSAEEILGSGGFGKVYRAYLPSDGTMAAVKCLAEKGEKFEKTFVAELVAVAHLRHRNLVRLRGWCVHEDQLFIVYDYMPNRSLDRVLFRRPENGGTDLSWKQRVKIVRGLAAALFYLHEQLETQIIHRDVKTSNVMLDSNYNAKLGDFGLARWLEHDLEYQNSVPSMSHHQFRLVETTKIGGTIGYLPPESFQRRSIATAKSDVFSFGIVLLEMVSGRRAVDLTCPDDQIVLLDWFRKLSDDGMPLLGGDNRLPDGSYNLIEMERLIHLGLLCTLQSPLYRPNMKWVVEALSGGMNLPALPSFQSHPQYISLSSTTNGSTTRSTSSSRTTATTITVSSSDFVSANGETIYMTAESGNNYTNSSDKLLDRTKTFQMIDNPRVISFKEIISATNNFSDSQRVAELDFGTAYHGFLDSSHHVLVKRLGMKTCPALRERFSNELENLGRLRHRNLIQLRGWCTEQGEMLVVYDYSADRLLSHLLFQHDNRSLQWCHRYNIIKSLASAILYLHEEWDEQVIHKNITSSAVILDIDLNPKLSSFALAEFLTRNEHGNHHVTIDKSKSVRGIFGYMSPEYLDSGDAAATADVYSFGVVVLEVITGQMAVDFRRPEVLLVRKVHEFHTRKRSLEELADIRLNGEYNHKELTRMLRLGVACTHSNPDLRPKMRQIVKILDGNDQCFPKEEKMESLEGWKQRNATSLSLVRRIQALGIQ 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 575710 578187 + CmoCh17G001060.1 Cmo17g00106 400489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00106 825 Gene3D Transferase(Phosphotransferase) domain 1 589 808 - -
Cmo17g00106 825 Gene3D Phosphorylase Kinase; domain 1 471 586 - -
Cmo17g00106 825 Gene3D Phosphorylase Kinase; domain 1 89 193 - -
Cmo17g00106 825 SUPERFAMILY Protein kinase-like (PK-like) 487 786 IPR011009 -
Cmo17g00106 825 Pfam Protein tyrosine and serine/threonine kinase 517 786 IPR001245 GO:0004672|GO:0006468
Cmo17g00106 825 SMART serkin_6 117 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00106 825 SUPERFAMILY Protein kinase-like (PK-like) 101 430 IPR011009 -
Cmo17g00106 825 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Cmo17g00106 825 ProSiteProfiles Protein kinase domain profile. 510 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00106 825 Pfam Protein kinase domain 118 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00106 825 PANTHER RECEPTOR LIKE PROTEIN KINASE S.2 1 824 - -
Cmo17g00106 825 PANTHER - 1 824 - -
Cmo17g00106 825 ProSiteProfiles Protein kinase domain profile. 117 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00106 825 Gene3D Transferase(Phosphotransferase) domain 1 194 412 - -
Cmo17g00106 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00106 - - - csv:101205657 1441.02
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g00998 Cmo17g00106 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00106 Cmo-Chr17:575710 Cmo14g00192 Cmo-Chr14:869864 4.56E-53 dispersed
Cmo17g00106 Cmo-Chr17:575710 Cmo08g00998 Cmo-Chr8:6470819 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g896 . . . Bda08g00033 . . . . Cmo08g00998 Cmo17g00106 . . . . . . . . . . . . . . Cla06g00751 . . . . . . . . . . . . Chy05g00555 . . . . . . . . . . . . Cma08g01026 Cma17g00103 Car08g00903 Car17g00092 Cpe12g00092 Cpe17g00250 Bhi12g01503 . . . . . Lcy13g0459 . . . . . . . Lsi09g01148 . . Cme05g00712
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010661 1 1 0 0 0 1 2 0 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 2 0 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74989 PF07714 PK_Tyr_Ser-Thr 5.30E-29 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00106 Cmo_Chr17 FPKM 26.967768 32.618233 20.126423 20.680929 31.454464 32.279438 32.957504 17.005274 14.839466 15.497163