Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00108 ATGGGAATGATGATAATATTTGTACGAGGAAATGAAGATGAACGTTATAGAAGCGTGGGAGGGAAGAAATTGGCATGGCGGACAGTGGTTGTGGATCAGAGCGGCCATGGAAATTTCTCAACCATTCAAGCCGCCATTGATTCTGTTCCTTCAAATAATATGTTCTGGATCTCCATTCATATCAACCCTGGTATTTACAGAGAGAAGGTGAAAATCCCATATGATAAGCCGTATATCATTTTGAAAGGACAAAGAAGAAAGACAACAAAGGTTGTCTGGAACGACCATTTCACTCTTGCTCAAAGTCCTACTTTCACTTCTTCAGCTGATAATGTTGTCGTTAAATCCATCACTTTTGTGAATTCGTATAACTTTCCATGGACTAATGGAAATCGAAGAGCTCCAGCAGTTGCAGCTATGATCACCGGTGATAAGGCTTTGTTTTATAAATGTGGGTTCTATGGTGTCCAAGATACCTTGTGGGATGATCAAGGTCGACATTATTATCATCGTTGCGTCATTCAAGGTGCTGTCGATTTTATTTTCGGAAGCGCCCAATCCATTTTTCAGGGATGTTCGATATCAGTGGTGGGAGAAGCACTTCTTCCATTGGGGTCTACAAGCTTCATAACAGCACAAGGAAGAACCGACCCAAATGATGCAAATGGGTTTGTTTTCAAAGATTGCAAAGTGTTTGGGAGTGGCTCAGCTTTCTTAGGAAGGCCATGGAGAGGCTACTCAAGGGTTATCTTTTACAATTCTAGCTTCTCCAACGTCATAAACCCTAGTGGTTGGGATCCTTGGCATTTTGTTGGTCATGAGTAA 825 41.7 MGMMIIFVRGNEDERYRSVGGKKLAWRTVVVDQSGHGNFSTIQAAIDSVPSNNMFWISIHINPGIYREKVKIPYDKPYIILKGQRRKTTKVVWNDHFTLAQSPTFTSSADNVVVKSITFVNSYNFPWTNGNRRAPAVAAMITGDKALFYKCGFYGVQDTLWDDQGRHYYHRCVIQGAVDFIFGSAQSIFQGCSISVVGEALLPLGSTSFITAQGRTDPNDANGFVFKDCKVFGSGSAFLGRPWRGYSRVIFYNSSFSNVINPSGWDPWHFVGHE 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 580652 582249 - CmoCh17G001080.1 Cmo17g00108 400491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00108 274 ProSitePatterns Pectinesterase signature 2. 174 183 IPR033131 -
Cmo17g00108 274 PANTHER PECTINESTERASE 10-RELATED 10 274 - -
Cmo17g00108 274 SUPERFAMILY Pectin lyase-like 27 269 IPR011050 -
Cmo17g00108 274 Pfam Pectinesterase 29 269 IPR000070 GO:0030599|GO:0042545
Cmo17g00108 274 Gene3D - 10 274 IPR012334 -
Cmo17g00108 274 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 10 274 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00108 - - - csv:101205421 496.893
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01079 Cmo-Chr5:8670001 Cmo17g00108 Cmo-Chr17:580652 2.55E-86 dispersed
Cmo05g01081 Cmo-Chr5:8679472 Cmo17g00108 Cmo-Chr17:580652 1.09E-87 dispersed
Cmo17g00108 Cmo-Chr17:580652 Cmo14g01618 Cmo-Chr14:12855319 5.84E-63 dispersed
Cmo17g00108 Cmo-Chr17:580652 Cmo14g00235 Cmo-Chr14:1081221 2.31E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g886 . . . . . . . . . Cmo17g00108 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa02g00934 . . . . . . . . . . . . . . . . Car17g00093 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011364 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00108 Cmo_Chr17 FPKM 11.840358 9.707917 15.952212 15.856326 15.112426 15.882582 14.776216 12.371146 15.764497 13.586345