Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00112 ATGCCTTCCCCTTCCCCCACATTCACGCATTTACTCGCACCCATCTCTATTTCTGCCCCGCCCGCCCTTGCTGCTGCAGCGTCCTTTTTCTTCACATTCACCCTTGTTTGCCTTGGAGATCGGCAAATGGGTGGCCACGGAAAGGTCTTTACATTGGCTGAAGTCTCTCAGCACAATACCCGCCAGGACTGTTGGTTGATCATCAATGGCAAGGTTTACAACGTAACCGAGTTCTTGGAAGACCATCCCGGTGGCGACGAGGTGTTGTTGTCTGGCACAGGTAAGGATGCAACAGATGATTTCGAAGACGTGGGTCATAGTGAGAGTGCAAGAGAAACGATGAACAAATACTATGTTGGAGACATTGACATCTCGACAATCCCTGAACGTTTGACATACACAGCTTCGAAGCAGCCTCACTACAATCAAGATAAGACGACCGAGTTCATCGTCAAGCTTCTCCAGTTCCTGGTCCCTCTCGCAATCTTGGGTCTGGCAGTTGGTATCCGCTTTTATAGCAAATCAACCTGA 531 49.53 MPSPSPTFTHLLAPISISAPPALAAAASFFFTFTLVCLGDRQMGGHGKVFTLAEVSQHNTRQDCWLIINGKVYNVTEFLEDHPGGDEVLLSGTGKDATDDFEDVGHSESARETMNKYYVGDIDISTIPERLTYTASKQPHYNQDKTTEFIVKLLQFLVPLAILGLAVGIRFYSKST 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 595825 598375 + CmoCh17G001120.1 Cmo17g00112 400495

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00112 176 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 47 123 IPR001199 -
Cmo17g00112 176 SMART Cyt_b5_2 50 123 IPR001199 -
Cmo17g00112 176 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 78 85 IPR018506 GO:0020037
Cmo17g00112 176 PANTHER BNAC04G43300D PROTEIN 43 174 - -
Cmo17g00112 176 Pfam Cytochrome b5-like Heme/Steroid binding domain 51 122 IPR001199 -
Cmo17g00112 176 PRINTS Cytochrome B5 signature 72 82 IPR001199 -
Cmo17g00112 176 PRINTS Cytochrome B5 signature 110 122 IPR001199 -
Cmo17g00112 176 PRINTS Cytochrome B5 signature 82 96 IPR001199 -
Cmo17g00112 176 PRINTS Cytochrome B5 signature 97 104 IPR001199 -
Cmo17g00112 176 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 47 128 IPR036400 -
Cmo17g00112 176 Gene3D - 45 125 IPR036400 -
Cmo17g00112 176 PANTHER CYTOCHROME B5 43 174 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00112 K23490 CYB5; cytochrome b5 - csv:101213506 252.677
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g02193 Cmo-Chr14:15650456 Cmo17g00112 Cmo-Chr17:595825 1.28E-42 dispersed
Cmo15g01073 Cmo-Chr15:6968038 Cmo17g00112 Cmo-Chr17:595825 5.56E-61 dispersed
Cmo14g01941 Cmo-Chr14:14367871 Cmo17g00112 Cmo-Chr17:595825 9.85E-76 wgd
Cmo17g00112 Cmo-Chr17:595825 Cmo19g00182 Cmo-Chr19:1180756 1.96E-47 wgd
Cmo17g00112 Cmo-Chr17:595825 Cmo02g01726 Cmo-Chr2:9856432 9.27E-62 wgd
Cmo17g00112 Cmo-Chr17:595825 Cmo06g01256 Cmo-Chr6:9487661 3.62E-74 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo02g01170 CST 1 134 NADPH P450 reductases AT5G53560 76.9 8.4e-58 220.3
Cmo15g01073 CST 1 134 NADPH P450 reductases AT5G53560 76.1 1.2e-56 216.5
Cmo14g01941 . 1 133 NADPH P450 reductases AT5G53560 69.9 4.8e-53 204.5
Cmo06g01256 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.5e-51 199.5
Cmo17g00112 . 43 175 NADPH P450 reductases AT5G53560 63.9 3.9e-47 184.9
Cmo02g01726 . 80 205 NADPH P450 reductases AT5G53560 65.1 2.4e-44 175.6
Cmo14g01941 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cmo06g01256 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cmo17g00112 . 43 175 NADPH P450 reductases AT5G48810 62.2 3.5e-46 181.8
Cmo02g01726 . 80 206 NADPH P450 reductases AT5G48810 61.2 4.2e-44 174.9
Cmo15g01073 CST 1 134 NADPH P450 reductases AT5G48810 57.4 2.1e-43 172.6
Cmo02g01170 CST 1 134 NADPH P450 reductases AT5G48810 57.4 6.1e-43 171.0
Cmo14g01941 . 22 133 NADPH P450 reductases AT2G32720 84.8 1.0e-50 196.8
Cmo06g01256 . 22 133 NADPH P450 reductases AT2G32720 83.0 5.0e-50 194.5
Cmo17g00112 . 64 175 NADPH P450 reductases AT2G32720 77.7 4.3e-46 181.4
Cmo02g01726 . 95 206 NADPH P450 reductases AT2G32720 69.6 3.2e-41 165.2
Cmo02g01170 CST 22 133 NADPH P450 reductases AT2G32720 66.1 1.0e-39 160.2
Cmo19g00182 . 5 108 NADPH P450 reductases AT2G32720 74.0 1.0e-39 160.2
Cmo15g01073 CST 22 133 NADPH P450 reductases AT2G32720 64.3 5.1e-39 157.9
Cmo05g00477 . 1 130 NADPH P450 reductases AT1G26340 57.5 6.1e-40 161.0
Cmo07g01169 CST 2 281 NADPH P450 reductases AT5G17770 81.1 6.3e-132 467.6
Cmo03g00203 CST 2 281 NADPH P450 reductases AT5G17770 80.7 5.4e-131 464.5
Cmo06g00047 . 2 316 NADPH P450 reductases AT5G17770 69.0 1.6e-119 426.4
Cmo20g00011 . 1 267 NADPH P450 reductases AT5G17770 64.9 3.5e-98 355.5
Cmo02g01170 CST 1 134 NADPH P450 reductases AT5G53560 76.9 8.4e-58 220.3
Cmo15g01073 CST 1 134 NADPH P450 reductases AT5G53560 76.1 1.2e-56 216.5
Cmo14g01941 . 1 133 NADPH P450 reductases AT5G53560 69.9 4.8e-53 204.5
Cmo06g01256 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.5e-51 199.5
Cmo17g00112 . 43 175 NADPH P450 reductases AT5G53560 63.9 3.9e-47 184.9
Cmo02g01726 . 80 205 NADPH P450 reductases AT5G53560 65.1 2.4e-44 175.6
Cmo14g01941 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cmo06g01256 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cmo17g00112 . 43 175 NADPH P450 reductases AT5G48810 62.2 3.5e-46 181.8
Cmo02g01726 . 80 206 NADPH P450 reductases AT5G48810 61.2 4.2e-44 174.9
Cmo15g01073 CST 1 134 NADPH P450 reductases AT5G48810 57.4 2.1e-43 172.6
Cmo02g01170 CST 1 134 NADPH P450 reductases AT5G48810 57.4 6.1e-43 171.0
Cmo14g01941 . 22 133 NADPH P450 reductases AT2G32720 84.8 1.0e-50 196.8
Cmo06g01256 . 22 133 NADPH P450 reductases AT2G32720 83.0 5.0e-50 194.5
Cmo17g00112 . 64 175 NADPH P450 reductases AT2G32720 77.7 4.3e-46 181.4
Cmo02g01726 . 95 206 NADPH P450 reductases AT2G32720 69.6 3.2e-41 165.2
Cmo02g01170 CST 22 133 NADPH P450 reductases AT2G32720 66.1 1.0e-39 160.2
Cmo19g00182 . 5 108 NADPH P450 reductases AT2G32720 74.0 1.0e-39 160.2
Cmo15g01073 CST 22 133 NADPH P450 reductases AT2G32720 64.3 5.1e-39 157.9
Cmo05g00477 . 1 130 NADPH P450 reductases AT1G26340 57.5 6.1e-40 161.0
Cmo07g01169 CST 2 281 NADPH P450 reductases AT5G17770 81.1 6.3e-132 467.6
Cmo03g00203 CST 2 281 NADPH P450 reductases AT5G17770 80.7 5.4e-131 464.5
Cmo06g00047 . 2 316 NADPH P450 reductases AT5G17770 69.0 1.6e-119 426.4
Cmo20g00011 . 1 267 NADPH P450 reductases AT5G17770 64.9 3.5e-98 355.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00112 Cmo_Chr17 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0