Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00119 ATGCCGGAGTTTGGCCGAGAGGGAGAGGGATCAGTAATGGCGGCACTTAGTAAGTGGTCTTCTCTGTCTCTGTTTGGCCTTGCAATGGTGTTCTTCGTAACAATCGCTGTGATTCGCAAGGGAGAGACGTCTGAAGTTAGGGTGCAGAATGATGATATGGAGGAAGAACTCAACAATGAACATGCTGTGGATAATCCTGACGAGATTGCTGCCTCTGTTGAGATGAGCATCCGTAATAGCACTGAAAGGAGGAAGTTGGGATACTTCTCTTGTGGAACAGGCAATCCCATTGATGACTGCTGGCGTTGTGACTCAAATTGGCACCGAAACCGTAAACGTCTAGCTGAATGTGGCATCGGGTTCGGTCGGAATGCTATTGGTGGTCGTGACGGTCGTTTCTATGTCGTTACTGATTCGAGTGACCACGATCCAGTGAACCCGAAGCCAGGGACTCTTCGTCATGCTGTCATTCAAGAGAAACCTCTTTGGATTGTGTTCAAAAGAGACATGGTGATTCAATTGAAACAAGAACTCATCATGAACAGTTTCAAAACCATTGATGCTCGAGGAGTCAATGTACATATTGCCAATGGCGCTTGCATCACAATCCAGTTTGTGACTAACATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACAGGGAATGCCATGGTGAGAAGCTCTCCAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGATCCAGCCATATATGGATTGACCACAATTCGCTCTCTAATTGTGCTGATGGACTTATTGATGCCATTATGGGCTCAACCGCTATCACAATCTCCAACAACCACTTCACTCACCACAATGAGGTGATGCTTCTAGGGCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGCAAGGGGCTCATTCAAAGAATGCCAAGGTGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTACACTCATTGGGAGATGTATGCCATTGGTGGTAGTGCCAACCCCACCATCAATAGTCAAGGCAACAGATATGCAGCTCCATCCAACCCTTTTGCCAAAGAGGTGACTAAGCGAGTCGAAACGCTGGAGAGCAAATGGAAAGGCTGGAATTGGAGATCAGAAGGAGATATGTTACTAAACGGTGCATATTTCACCCCATCCGGCGCCGGAGCTTCAGCAAGCTATGCCAGAGCCTCAAGCTTAGGAGCCAAATCTGCTTCCATGGTAGGCTCCATCACTTCTTCTGCAGGTTCTCTCCCATGCCGCCGAGGCCATCCCTGCTAG 1332 47.45 MPEFGREGEGSVMAALSKWSSLSLFGLAMVFFVTIAVIRKGETSEVRVQNDDMEEELNNEHAVDNPDEIAASVEMSIRNSTERRKLGYFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDHDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGKGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPSNPFAKEVTKRVETLESKWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSAGSLPCRRGHPC 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 645851 651864 + CmoCh17G001190.1 Cmo17g00119 400502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00119 443 PRINTS Pollen allergen Amb family signature 414 437 IPR018082 -
Cmo17g00119 443 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Cmo17g00119 443 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Cmo17g00119 443 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Cmo17g00119 443 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Cmo17g00119 443 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Cmo17g00119 443 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Cmo17g00119 443 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Cmo17g00119 443 PANTHER PECTATE LYASE 18-RELATED 44 440 IPR045032 GO:0030570
Cmo17g00119 443 PANTHER PECTATE LYASE 44 440 - -
Cmo17g00119 443 Gene3D - 94 436 IPR012334 -
Cmo17g00119 443 SUPERFAMILY Pectin lyase-like 71 437 IPR011050 -
Cmo17g00119 443 Pfam Pectate lyase 181 358 IPR002022 -
Cmo17g00119 443 SMART amb_all 169 366 IPR002022 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo14g01918 Cmo17g00119 CCT
Cmo06g01274 Cmo17g00119 CCT
Cmo14g01918 Cmo17g00119 ECH
Cmo06g01274 Cmo17g00119 ECH
Cmo08g01006 Cmo17g00119 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00925 Cmo-Chr7:4447501 Cmo17g00119 Cmo-Chr17:645851 0 dispersed
Cmo14g00614 Cmo-Chr14:3100858 Cmo17g00119 Cmo-Chr17:645851 1.61E-159 dispersed
Cmo17g00119 Cmo-Chr17:645851 Cmo18g00180 Cmo-Chr18:1237313 0 dispersed
Cmo14g01918 Cmo-Chr14:14249841 Cmo17g00119 Cmo-Chr17:645851 0 wgd
Cmo17g00119 Cmo-Chr17:645851 Cmo19g00155 Cmo-Chr19:944910 0 wgd
Cmo17g00119 Cmo-Chr17:645851 Cmo02g01742 Cmo-Chr2:9932597 0 wgd
Cmo17g00119 Cmo-Chr17:645851 Cmo06g01274 Cmo-Chr6:9615807 0 wgd
Cmo17g00119 Cmo-Chr17:645851 Cmo08g01006 Cmo-Chr8:6539045 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00119 K01728 - csv:101217580 835.484