Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00120 ATGTCCATTCAATCCCTCTTCTTCTTCTTCTTCATTCATTCTTCTCTTGCTGCAACGAACCATGAAGCTTCCATTCTCCTCTCATGGCTTCACAGCTCCTCCACTCTGTTTCCCCCTTCCCCTGTTTTTCCCGACTGGAATGTCCTTGACTCAACGCCCTGTAACTGGACCTCCATTACTTGTTCTTCTCATGGTTTCGTCACTGAAATCAACATCATTTCCGTCCCTCTTCAGCTCCCTTTCCCTTCAAATCTCTCCTCTTTTTCTTCCCTTCAAAGGCTTGTCATTTCTGATGCTAATCTCACCGGCTCCATTCCTTCCGACATTGGTGACTGCACTGAGCTCACTCTCATTGACCTCAGCTCCAACGCCCTTGTCGGAACAATCCCGACAACCATTGGAAAGCTACAGAACCTCGAGGAGCTGATCTTGAACTCCAATCAGCTCACTGGCAAAATCCCACTAGAGCTCACTAATTGTAAAGCTCTCAAGAACTTGCTCTTGTTTGACAACCGGCTGACCGGAGGAATCCCTTCCGATGTGGGCAAAATGGGGAATCTTGAAATTCTTAGAGCAGGTGGGAATCGAGATATCAGCGGCGAAATCCCAGAAGAGATTGGAAATTGCAGGAATTTGACGATTTTGGGTCTGGCTGACACCGGAATTTCAGGCTCTTTGCCTAGTTCTTTAGGCAAACTTCAGAAGCTTCAAACTTTGTCTATTTACACGACCAAGATCTCCGGCGAGATTCCACCGGAGTTAGGTAACTGTTCTGAGATTGTTAACTTGTTTCTTTATGAAAATAGTTTATCTGGCTCTGTTCCTAAAGAGATTGGTAAGCTGCAGAAGCTTGAGCAGCTGTTTCTATGGCAGAATGAGCTAATTGGGACAATCCCATCTGAAATTGGTGAATGTTCTAGCTTGAAAAAGATTGATCTTTCATTGAATTTTCTTTCTGGGGCTATTCCTTTAACATTAGGGGGACTGTCTTTGCTTGAAGAGTTCATGATTAGTAACAATAACGTGTCGGGGTCGATACCTTCGAATCTTTCGAACGCGACGAATCTGTTGCAGTTGCAGCTTGATAGTAATGAGATTTCTGGTTTGATCCCATTTGAGTTGGGGATGTTATGGAAGTTGAATGTGTTCTTCGCTTGGCAGAATCAGCTCGAAGGAAGCGTTCCATCGAGTTTGTCGAATTGTTCGAATCTTCAAGCTCTTGATTTGTCTCATAATTCATTAACAGGAAGTGTTCCTCCTGGATTGTTTCATCTTAAAAACTTGACAAAGCTTCTTTTGATTTCAAATGATATCTCTGGAACATTGCCACCTGATGTTGGTAACTGCTCGTCTCTTATCCGAATGAGGCTCGGAAACAATCGGATTGCCGGGGAGATTCCGAGCTCGATCGGTGCTCTACAGAGCTTGGATTTCCTTGATTTGTCAAGAAACCATCTTTCAGGATCATTGCCTGTTGAGATTGGGAATTGTAAAGCTTTGGAAATGATTGATATCAGCAACAATGAGCTGAAAGGTTCATTGCCTCAGTCACTTACTTCGCTGTCTCAGCTCCAAGTTTTGGATGTCTCATCAAACCAATTTGATGGTGAGCTTCCAGCTAGTTTGGGGAATCTTGTTTCTTTGAATAAGCTCATTCTAGCTCGAAACGCTTTCTCAGGAACAATTCCGACATCACTAAAACATTGTTCGAGTCTCCAACTACTTGATCTTAGCAGCAATCAGCTTATCGGGAACATACCGATTGAGTTAGGCTCGATCAAGTCGCTCGAGATCGCTCTCAACCTTAGTTGTAATGGTTTCACTGGCTCATTGCCTTCTCAAATGTCTGGACTTAGTAAGCTCTCTGTTCTAGACCTTTCACATAACAGCCTTGAGGGTGATTTGAAGCCGCTTGCAGGGCTCGATAATCTCGTCGTGCTTAACGTTTCGTTTAATAACTTTACTGGTTATCTTCCGGACAACAAACTTTTCAGACAACTATCACTGACCGACTTGGCAGGCAATAACGGTCTCTGTTCTTCGATTCGAGATTCGTGTTTCTTGACAGATTCCGATAGGGAAGGACTTGCTAGAGATGGGGATGATACAATGAGATCAAGAAAGCTCAAGCTAGCAATTGCATTGCTCATTGTACTAACTGTTGTGATGATTGTAATGGGCGTGATTGCGGTGATTCGAGCTCGAACGATGATTCGAGATGAGGATTTGGAGCTGGGAGATACATGGCCTTGGCAATTCACACCATTTCAAAAGCTGAGTTTCTCTGTTGAGGAAGTGTTGAGGTGTCTTGTGGACGGTAACGTGATCGGCAAAGGGTGTTCGGGGATGGTTTATCGAGCTGAAATGGATAACGGAGAAGTGATTGCAGTGAAGAAGCTGTGGCCAACTATGATGGCAACAGACAATAGCTACAACGACGACAAATGTGGCGTTCGTGATTCGTTTTCGGCAGAAGTTAAAACTCTAGGCTCAATACGACATAAGAACATCGTGCGGTTCTTGGGCTGTTGTTTGAATCGGAATACACGACTACTAATGTACGATTATATGCCGAATGGTAGTTTAGGAAGTCTCCTACATGAGAGAAATGGGAATACCTTGGAATGGGATCTAAGGTACCAAATCTTACTAGGTGCAGCACAAGGCCTTGCCTATTTACACCATGATTGTGTCCCTCCAATTGTTCATAGAGACATTAAGGCCAATAACATACTCATCGGTCTTGAATTCGAGGCCTATATCGCTGATTTCGGCCTTGCCAAGCTTATCGACAATGGAGATTTCGGTCGATCATCCAACACAGTTGCAGGGTCCTATGGCTACATTGCTCCCGAATACGGCTACATGATGAAGATAACCGAAAAGAGCGATGTCTACAGCTACGGTGTCGTGATAATCGAAGTCCTAACAGGAAAACAACCAATCGACCCAACGATACCTGACGGACAACACATCGTAGATTGGGTGAGAAGAAAGAGAGGGAATGAAGTCCTTGACCCAAGCTTGCAATCAAGACCAGAGACAGAAATAGAGGAGATGATGCAAGTTTTAGGCATAGCGTTATTGTGCGTAAACTCGTCACCAGACGAGCGACCGACAATGAAAGACGTCGAAGCAATGCTGAAAGAAATCAAACACGAAAGAGAAGAGTATGCGAAAGTCGACGTGCTGCTCAAAGCTGGCTCCTCTCCTGCCAATGGTGGGCAAGAGAACAAGAGCTCAAATAATGTTAATGGCGTTGGAATTGCAACATCTTCTTCAAAAATGTCGACCAAAAGCTTGTTGCCTAAAAGCAATAACACGAGCTTTTCTGCTTCCTCGTTGATCTACTCGTCATCGTCCTCTAATGGCAGAAAGAGTTAA 3384 44.18 MSIQSLFFFFFIHSSLAATNHEASILLSWLHSSSTLFPPSPVFPDWNVLDSTPCNWTSITCSSHGFVTEINIISVPLQLPFPSNLSSFSSLQRLVISDANLTGSIPSDIGDCTELTLIDLSSNALVGTIPTTIGKLQNLEELILNSNQLTGKIPLELTNCKALKNLLLFDNRLTGGIPSDVGKMGNLEILRAGGNRDISGEIPEEIGNCRNLTILGLADTGISGSLPSSLGKLQKLQTLSIYTTKISGEIPPELGNCSEIVNLFLYENSLSGSVPKEIGKLQKLEQLFLWQNELIGTIPSEIGECSSLKKIDLSLNFLSGAIPLTLGGLSLLEEFMISNNNVSGSIPSNLSNATNLLQLQLDSNEISGLIPFELGMLWKLNVFFAWQNQLEGSVPSSLSNCSNLQALDLSHNSLTGSVPPGLFHLKNLTKLLLISNDISGTLPPDVGNCSSLIRMRLGNNRIAGEIPSSIGALQSLDFLDLSRNHLSGSLPVEIGNCKALEMIDISNNELKGSLPQSLTSLSQLQVLDVSSNQFDGELPASLGNLVSLNKLILARNAFSGTIPTSLKHCSSLQLLDLSSNQLIGNIPIELGSIKSLEIALNLSCNGFTGSLPSQMSGLSKLSVLDLSHNSLEGDLKPLAGLDNLVVLNVSFNNFTGYLPDNKLFRQLSLTDLAGNNGLCSSIRDSCFLTDSDREGLARDGDDTMRSRKLKLAIALLIVLTVVMIVMGVIAVIRARTMIRDEDLELGDTWPWQFTPFQKLSFSVEEVLRCLVDGNVIGKGCSGMVYRAEMDNGEVIAVKKLWPTMMATDNSYNDDKCGVRDSFSAEVKTLGSIRHKNIVRFLGCCLNRNTRLLMYDYMPNGSLGSLLHERNGNTLEWDLRYQILLGAAQGLAYLHHDCVPPIVHRDIKANNILIGLEFEAYIADFGLAKLIDNGDFGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGVVIIEVLTGKQPIDPTIPDGQHIVDWVRRKRGNEVLDPSLQSRPETEIEEMMQVLGIALLCVNSSPDERPTMKDVEAMLKEIKHEREEYAKVDVLLKAGSSPANGGQENKSSNNVNGVGIATSSSKMSTKSLLPKSNNTSFSASSLIYSSSSSNGRKS 1127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 661522 665650 + CmoCh17G001200.1 Cmo17g00120 400503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00120 1127 Pfam Protein tyrosine and serine/threonine kinase 773 1047 IPR001245 GO:0004672|GO:0006468
Cmo17g00120 1127 MobiDBLite consensus disorder prediction 1071 1127 - -
Cmo17g00120 1127 Gene3D Ribonuclease Inhibitor 515 594 IPR032675 -
Cmo17g00120 1127 Gene3D Ribonuclease Inhibitor 217 321 IPR032675 -
Cmo17g00120 1127 Gene3D Ribonuclease Inhibitor 595 686 IPR032675 -
Cmo17g00120 1127 Gene3D Ribonuclease Inhibitor 322 417 IPR032675 -
Cmo17g00120 1127 Gene3D Ribonuclease Inhibitor 418 514 IPR032675 -
Cmo17g00120 1127 SUPERFAMILY L domain-like 43 390 - -
Cmo17g00120 1127 Gene3D Ribonuclease Inhibitor 137 215 IPR032675 -
Cmo17g00120 1127 SMART LRR_typ_2 329 353 IPR003591 -
Cmo17g00120 1127 SMART LRR_typ_2 521 545 IPR003591 -
Cmo17g00120 1127 SMART LRR_typ_2 281 305 IPR003591 -
Cmo17g00120 1127 SMART LRR_typ_2 401 425 IPR003591 -
Cmo17g00120 1127 SMART LRR_typ_2 136 160 IPR003591 -
Cmo17g00120 1127 SMART LRR_typ_2 473 497 IPR003591 -
Cmo17g00120 1127 SMART LRR_typ_2 618 642 IPR003591 -
Cmo17g00120 1127 ProSitePatterns Protein kinases ATP-binding region signature. 776 799 IPR017441 GO:0005524
Cmo17g00120 1127 ProSiteProfiles Leucine-rich repeat profile. 403 426 IPR001611 GO:0005515
Cmo17g00120 1127 PRINTS Leucine-rich repeat signature 404 417 - -
Cmo17g00120 1127 PRINTS Leucine-rich repeat signature 618 631 - -
Cmo17g00120 1127 PANTHER RECEPTOR-LIKE PROTEIN KINASE 2 11 1120 - -
Cmo17g00120 1127 Pfam Leucine rich repeat N-terminal domain 20 62 IPR013210 -
Cmo17g00120 1127 SUPERFAMILY RNI-like 263 656 - -
Cmo17g00120 1127 Gene3D Transferase(Phosphotransferase) domain 1 857 1067 - -
Cmo17g00120 1127 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 11 1120 - -
Cmo17g00120 1127 ProSiteProfiles Leucine-rich repeat profile. 620 642 IPR001611 GO:0005515
Cmo17g00120 1127 ProSiteProfiles Protein kinase domain profile. 770 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00120 1127 ProSitePatterns Serine/Threonine protein kinases active-site signature. 901 913 IPR008271 GO:0004672|GO:0006468
Cmo17g00120 1127 SMART serkin_6 770 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00120 1127 Gene3D Phosphorylase Kinase; domain 1 754 856 - -
Cmo17g00120 1127 MobiDBLite consensus disorder prediction 1069 1127 - -
Cmo17g00120 1127 Gene3D Ribonuclease Inhibitor 21 136 IPR032675 -
Cmo17g00120 1127 SUPERFAMILY Protein kinase-like (PK-like) 750 1049 IPR011009 -
Cmo17g00120 1127 Coils Coil 1041 1061 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00120 - - - csv:105434583 1845.09
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01010 Cmo17g00120 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02582 Cmo-Chr4:18896007 Cmo17g00120 Cmo-Chr17:661522 0 dispersed
Cmo10g00117 Cmo-Chr10:515742 Cmo17g00120 Cmo-Chr17:661522 0 dispersed
Cmo11g00084 Cmo-Chr11:394869 Cmo17g00120 Cmo-Chr17:661522 0 dispersed
Cmo14g01916 Cmo-Chr14:14236205 Cmo17g00120 Cmo-Chr17:661522 0 dispersed
Cmo15g00577 Cmo-Chr15:2757736 Cmo17g00120 Cmo-Chr17:661522 0 dispersed
Cmo17g00120 Cmo-Chr17:661522 Cmo18g00141 Cmo-Chr18:1006291 0 dispersed
Cmo17g00120 Cmo-Chr17:661522 Cmo17g00121 Cmo-Chr17:692314 0 tandem
Cmo09g01103 Cmo-Chr9:6158256 Cmo17g00120 Cmo-Chr17:661522 0 transposed
Cmo14g01912 Cmo-Chr14:14220544 Cmo17g00120 Cmo-Chr17:661522 0 wgd
Cmo17g00120 Cmo-Chr17:661522 Cmo06g01278 Cmo-Chr6:9649766 0 wgd
Cmo17g00120 Cmo-Chr17:661522 Cmo08g01007 Cmo-Chr8:6551945 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g839 . . . . . . . Bma05g01270 Cmo08g01010 Cmo17g00120 . . . . . . . . . . . . . . . . . . . . . Cone14ag0207 . . . . . Chy05g00265 . . . . . . . . . . . . . . Car08g00914 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000434 1 4 5 2 3 4 5 3 4 4 4 4 5 4 3 5 4 5 6 4 4 3 3 2 3 4 3 1 2 3 107
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74990 PF07714 PK_Tyr_Ser-Thr 2.00E-43 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00120 Cmo_Chr17 FPKM 21.165592 23.792736 25.458685 27.714226 63.518551 56.005726 65.650597 45.07526 43.87027 45.390614