Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00127 ATGACGGAGGCCGCGATTCGGAAGAAGCCTGGCATGGCCAGCGTCAAAGACATGCCGATCCTCCAGGACGGGCCACCGCCGGGTGGATTCGCTCCGGTTCGCTATGCTCGCCGGATTCCCACCAAAGGCCCTAGCGCTATGGCGATTTTCCTTACTGCATTTGGTGCGTTTTCTTGGGGGATGTATCAGGTCGGCAAGGGCAACAAGATCCGAAGACAGTTTAAAGGAATAGTCTTTCCTGCTTTCCTCTGTTCCCTTCTTTTCCTTTTGCTTGAACGAGTTTATATTACTCTTTTGTTGCAAACTATGAATTTCACAATGAGCATGTACGGCGTGTATAGGGCACTGAAGGAAGAGAAATATGCAGCCCGACGAGCAATATTGCCCGTGCTTCAAGCTGAGGAAGATGAAAGATTCGTCAAAGAGTGGAAGAGTTACCTTGAATATGAGGCTGAAGTTATGAAGGATGTGCCTGGTTGGAAAGTTGGTGAAAATGTCTACAACTCTGGAAAATGGATGCCTCCAGCGACCGGTGAGCTACGACCCGAAGTCTGCATGCTTACCCTAGTCGGTGGCGACTTTGGTTCGGTCGATACTCGTAATAAGTTGAGGCTTTTGAGCTACAATGTGCTAAGAAGGAACTTGAAATTGGCGTGTGTTTTGCCCAATTCGATGGCCTCGACTCGTAAATTAGAGCATTTGGAAGCAGGGAAGCGTCGGTTAGAAGAGTTCAGAAAGAAAAAGGCAGCAGAGCGAGTTAAGAAAGCTGCACCACCAATCCAAAATCACATTTCAGATGGTGGTTCCCAGGAGAAGAAGCCTTTAGAATCTGAACATGCTCAACGAATTACAGATTCTGATGGAGCTACGACAACAAACGGAACAGACAGATCTGCTGTTGAATCATCTTCTGCCCTAGTCAAAGATGTCAGACATGCAGATAACTTTTCTCAGAATATTGATCAAAATGCTTTGAATGAAAGTCGTGCACGCTATCCATCTACAAGAAATGTTGATGGAGGTTTCCCTGCTTATCCAGTGAAGCAACCGTCAAACAGTCAAGAAATTAGGACACTCAAAGGTTTGAGAGTCGCTGGAACCACAGATGATTATAGTAGAAATGAAATATCAGAAATAAATAACGACACTGGAGTAATCAGTGGATCCCAGGATAGAACGCCATTTGGGAGCGCATTTGGCATAAACCCACAAGCTAATGAAGGGATCGATAGCATTTCTAGTCAATCTGCACAGCATGGGGTGGATGGACTACTCTACAGAAGAGATGGTCGAGAGAATTCTATAATTAAGAGCTCTGGCTCTTTGCATAAATTTTCTGCAAATACTTCTCCACAGAATACTGCTGGCAGTTTACAAGATACAGATTCCAGTAGTAACAATATTTTGGCTAGTGAACATTCTTTCTCGTCATCCTATGATGGCCTCTTTAATAGTACAACTAGAAAAGGATATAGTTCCGATGAAGTTGGGGAAAATGTGAACAAAAATTTTGACTTGATTGACAAACAGACGTCTGTTCTTGAGCAACGAAAGCCCACTGATGTGACTGATTTAATTAGAATCAAGCCTGCCTATGTGCAGTCCTCTGAATCTGCTGGCTTGAATACGGATATTAGAGGCCCCTCCAACTATGAACAACTGTACACTGCATCATCTGAAAACAGTTTTAGGAGATCTCGCCCATCGTTTCTTGATTCTATTACTGTACCCAAGGTTCCTTCAGGGAGTTTTCTTGGACATGTCGAACATGATAAGGGATCTAGAATATCTGATGGGTTTAGAACAGATGAATCTGATGGCTCAGAATCATTAAATCTTCAGAAGCCACTAATGGATATGAAAAAAGTGGGAACATCCTCAGATTTTGCCTCTCAGAACACTCCAGTGCCATATAGCAATTCATTTCCTCCTTCAGTTTTTCCTGTTAAGGGGGTGAACCAGCCAATTATAGGAATAGAGGTTAATACTATGGAGAGGAAACACGAGCTCTTTTCAACCAAACAAAATGAAGATTTTGCTGCTCTGGAACAGCATATTGAAGATTTGACACAAGAGAAATTCTCGTTACAAAGAGCTTTGGATGCTTCAAGGGCTTTAGCAGAGTCCTTAGCTGCTGAAAATTCATCTCTTACTGATAGTTATAATAATCAGAGAAGCGTTGTCAACCAACTAAAATCGGATATGGAGACGTTACAGGAGGAAATGAAGACCCAGATGGTTGAACTGGAGTCTATCAAACTTGAGTATGCAAATGTACAACTGGAGTGTAATGCAGCTGATGAACGTGCCAAGCTGATAGCTTCTGAAGTAATTGGTCTTGAAGAGAAGGCCTTAAGACTAAGGTCTAATGAGTTAAAGCTGGAGAGGCAATTGGAGAACTTAGAAGCTGAAATCTCTTCGTACAAGAAGAAAATATCTAGCATGGAGAGAGAACGTCATGATTTTCAATCAACTATTGATGCTCTTCAGGAAGAGAAGAAGTTGTTGCAGTCTAAGCTACGCAAAGCTTCTGCAAGTGAAAAGTCCATTGATATTAGCAATCCTAAAAATAAAAAAGATATCGCGACATCTACCGAAGATTTAGTAAATACAGATACTGCTCCCAGTACTTCTAAACATGAAGTAAAAGATGGAGAATCTCTTACTGAAGATGATACCTCTGGAACTCTCATGCTGCTGGAAAATGCCACTGCTGAAGTTTCAGCGGTCAATATTCCTCCAGATCATATGAGGATGATTCAAAACATCAATGCTCTAATAGCTGAGTTAGCTGTAGAGAAAGATGAGTTAACACAAGCTTTGGCATCTGAGTTGGCTAGCAGTTCTAAGTTGAGGGAGTTGAACAAAGAATTGTCTAGGAAACTGGAAACACAAACTCAAAGATTAGAGCTTTTGACTGCTCAAAGTATGGCTGGTGAGATTGTTCCAGCAAGGCAACATGATTCTCGCACCGTGCATGATGAAGATATTGTACTTGCAGATGAAGGCGACGAGGTGGTTGAAAGAGTCTTGGGATGGATTATGAAGCTCTTTCCTGGCGGTCCATCACGCCGAAGGACCAGCAAGCTTCTTTAA 3096 42.54 MTEAAIRKKPGMASVKDMPILQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTAFGAFSWGMYQVGKGNKIRRQFKGIVFPAFLCSLLFLLLERVYITLLLQTMNFTMSMYGVYRALKEEKYAARRAILPVLQAEEDERFVKEWKSYLEYEAEVMKDVPGWKVGENVYNSGKWMPPATGELRPEVCMLTLVGGDFGSVDTRNKLRLLSYNVLRRNLKLACVLPNSMASTRKLEHLEAGKRRLEEFRKKKAAERVKKAAPPIQNHISDGGSQEKKPLESEHAQRITDSDGATTTNGTDRSAVESSSALVKDVRHADNFSQNIDQNALNESRARYPSTRNVDGGFPAYPVKQPSNSQEIRTLKGLRVAGTTDDYSRNEISEINNDTGVISGSQDRTPFGSAFGINPQANEGIDSISSQSAQHGVDGLLYRRDGRENSIIKSSGSLHKFSANTSPQNTAGSLQDTDSSSNNILASEHSFSSSYDGLFNSTTRKGYSSDEVGENVNKNFDLIDKQTSVLEQRKPTDVTDLIRIKPAYVQSSESAGLNTDIRGPSNYEQLYTASSENSFRRSRPSFLDSITVPKVPSGSFLGHVEHDKGSRISDGFRTDESDGSESLNLQKPLMDMKKVGTSSDFASQNTPVPYSNSFPPSVFPVKGVNQPIIGIEVNTMERKHELFSTKQNEDFAALEQHIEDLTQEKFSLQRALDASRALAESLAAENSSLTDSYNNQRSVVNQLKSDMETLQEEMKTQMVELESIKLEYANVQLECNAADERAKLIASEVIGLEEKALRLRSNELKLERQLENLEAEISSYKKKISSMERERHDFQSTIDALQEEKKLLQSKLRKASASEKSIDISNPKNKKDIATSTEDLVNTDTAPSTSKHEVKDGESLTEDDTSGTLMLLENATAEVSAVNIPPDHMRMIQNINALIAELAVEKDELTQALASELASSSKLRELNKELSRKLETQTQRLELLTAQSMAGEIVPARQHDSRTVHDEDIVLADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 1031
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 727296 742231 - CmoCh17G001270.1 Cmo17g00127 400510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00127 1031 Coils Coil 672 699 - -
Cmo17g00127 1031 MobiDBLite consensus disorder prediction 442 468 - -
Cmo17g00127 1031 MobiDBLite consensus disorder prediction 284 302 - -
Cmo17g00127 1031 MobiDBLite consensus disorder prediction 247 306 - -
Cmo17g00127 1031 Coils Coil 721 769 - -
Cmo17g00127 1031 Coils Coil 784 846 - -
Cmo17g00127 1031 MobiDBLite consensus disorder prediction 318 353 - -
Cmo17g00127 1031 Coils Coil 920 940 - -
Cmo17g00127 1031 MobiDBLite consensus disorder prediction 846 865 - -
Cmo17g00127 1031 MobiDBLite consensus disorder prediction 846 892 - -
Cmo17g00127 1031 Pfam GRIM-19 protein 96 180 IPR009346 -
Cmo17g00127 1031 Pfam GRIM-19 protein 20 73 IPR009346 -
Cmo17g00127 1031 MobiDBLite consensus disorder prediction 318 333 - -
Cmo17g00127 1031 Coils Coil 948 975 - -
Cmo17g00127 1031 MobiDBLite consensus disorder prediction 269 283 - -
Cmo17g00127 1031 PANTHER PROTEIN BLISTER 222 1031 IPR044194 GO:0040008
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00127 - - - bhj:120092754 1193.33
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01019 Cmo17g00127 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01020 Cmo-Chr8:6630427 Cmo17g00127 Cmo-Chr17:727296 1.30E-89 transposed
Cmo17g00127 Cmo-Chr17:727296 Cmo08g01019 Cmo-Chr8:6618622 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g814 . . . . Bpe04g01051 . Bma04g01032 . Cmo08g01019 Cmo17g00127 . . . . . . . . . . . . . . . . . . . . . Cone14ag0199 Cone15ag0212 . . . Csa02g01012 Chy05g00276 . . . . . . . . . Sed09g0207 . . Cma08g01048 Cma17g00125 Car08g00923 Car17g00111 Cpe12g00109 . Bhi12g01537 Tan06g2351 Cmetu05g1285 . . . Lcy13g0426 . . . . . . . Lsi09g01178 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004173 0 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 3 1 1 5 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00127 Cmo_Chr17 FPKM 62.178722 72.049782 28.104208 27.216125 76.506851 79.088272 76.944893 41.400558 40.932632 38.798424