Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00137 ATGGCGTCTCGGGGTAATAAGCGGCCTTCTATTACCGATGGCGATGAGAATTTAGGCGTTCTATCTAGGGTTTCTCGTTCCGTCTCTGATTCCCAAATCGTCCGGCGGGCGAAGAGCACAGCTTCCGACGCTGCCTTCGTTACCCAAAAACTCCTCCGTAGTACTGGTAAAGCTGCGTGGATTGCAGGGACGACTTTTCTCATTTTGGTGGTGCCGCTCATCATTGAGATGGATCGCGAGCAGCAGTTCAATGAGCTCGAGATGCAGCAGGCGAGTCTACTTGGTACTCCGGCCACTGCTGCTCCTAAATGA 312 52.88 MASRGNKRPSITDGDENLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAWIAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK 103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 789781 790092 + CmoCh17G001370.1 Cmo17g00137 400520

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00137 103 Pfam Mitochondrial import receptor subunit Tom22 38 90 IPR005683 GO:0005741|GO:0006886
Cmo17g00137 103 PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM9-2 1 103 IPR017411 -
Cmo17g00137 103 PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM9-2-LIKE 1 103 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00137 K17769 TOM22; mitochondrial import receptor subunit TOM22 - csv:105434589 170.629
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00137 Cmo-Chr17:789781 Cmo02g01761 Cmo-Chr2:10075735 9.77E-37 wgd
Cmo17g00137 Cmo-Chr17:789781 Cmo06g01302 Cmo-Chr6:9781075 1.29E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g781 . . . . . . . . . Cmo17g00137 . . . . . . . . . . . . . . Cla06g00699 Cam06g0750 Cec06g0756 Cco06g0768 Clacu06g0741 . Cre06g1500 . . Cone7ag0349 Cone4ag0362 Lsi05g01770 Csa02g01026 Chy05g00290 . . . . . . . . . Sed01g4263 . . Cma08g01058 Cma17g00137 Car08g00934 Car17g00120 Cpe12g00118 Cpe17g00219 Bhi12g01559 Tan06g2368 Cmetu06g0020 Lac12g2118 Hepe03g0315 . Lcy13g0411 Cla05g00409 Cam05g0446 Cec05g0454 Cco05g0454 Clacu05g0443 Cmu05g0421 Cre05g0483 Lsi09g01194 Csa03g01170 Chy06g00432 Cme05g00620
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002631 2 1 2 1 2 1 3 1 1 1 1 1 3 1 2 3 0 3 3 1 2 2 2 3 2 1 2 6 3 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00137 Cmo_Chr17 FPKM 46.176281 54.934513 58.25552 60.718971 68.044281 66.829674 69.023811 68.227959 59.077538 59.534027