Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00156 ATGGAAGCTACTAGGCGTTGGTTTAATAAGTTCAGATCCAAAGACAAGCCAAAATCCTCAACAAATAAGGAGAGTGCAGGAAATGCTAGAGATGCATCGAAAGCACCAACCAGTGAAGAGTTACCCTCAAATGTCACCAAGCAGAAGGTTGCAGCTGCCAAGCAGTATATAGAAAACCATTACAAGAAGCAAATGAAGAGCTTGGAAGAAAGGAGGGAGAGACGCCATGTACTAGAAAAGAAGTTGGCTGATGCTGAGGTCTCTCAAGAAGAGCAGAGCAACCTGCTTAAGCATCTAGAGAAGAAGGAAACGGAGTATATGCGCCTTCAGAGGCATAAAATGGGTGCTGATGATTTTGAGCCTCTAACAATGATAGGGAGGGGTGCTTTCGGAGAGGTTAGAGTTTGTCGTGAGAAAGCAACAGGCCATGTATATGCCATGAAGAAGCTTAAGAAATCAGAGATGCTTCGAAGAGGCCAGGTTGAACATGTGAAAGCTGAAAGGAATCTATTGGCGGAGGTTGACAGTAATTGTATTGTAAAGCTGTACTGCTCTTTCCAAGATGAAGAGTATTTGTATCTTATTATGGAATACTTACCTGGTGGAGATATGATGACTTTGCTTATGAGGAAAGATACTCTAACAGAAGACGAGGCCCGATTTTATGTTGGTGAAACAGTTTTAGCTATTGAGTCAATCCATAAACATAATTATATTCATAGAGATATCAAGCCAGATAACTTGCTTCTTGACAAGGATGGCCATATGAAATTATCAGATTTTGGATTATGTAAACCATTAGATTGTAGTAACCTACAAGAAAAGGATTTTTCCCAGGGAAATAACCTCAGTGGTGCTCTTCAAAGTGATGGGCGACCTGTGGCATCAAAACGCACACAACAGGAACAACTACAACATTGGCAAAGGAATAGGCGGATGCTTGCTTATTCTACAGTTGGAACTCCTGATTATATTGCTCCGGAAGTTTTGTTGAAGAAAGGATATGGAATGGAATGTGATTGGTGGTCACTTGGTGCCATCATGTATGAAATGCTTGTGGGATTTCCACCGTTTTACTCAGATGAGCCAATGTCAACTTGTAGGAAGATAGTTAATTGGAGAACTCATTTGAAATTTCCAGAAGAAGCAAAACTCTCTCCAGAAGCGAAGGATCTAATTAGTAAACTCTTATGCAATGTTGAACAAAGGCTTGGGACCAAGGGTGCAGATGAAATAAAGGCACACCCGTGGTTCAAGGGCATTGAATGGGACAAGTTGTATCAAATGAAAGCTGCATTTATTCCTGAGGTCAATGACGAATTGGATACTCAAAACTTTGAGAAGTTTGAAGAGACTGAAAATGCAATTCAGACGTCATCAAAATCAGGTCCATGGAGAAAGTATGATTCTTGCCATATGGGAATCAGCTTTTGGGGTGGTAAACAAACATTTGGCATGTCAATGATGTTATCATCGAAGGACGTCAATTTTGTGGGTTATACGTACAAAAACTTGGAAATCATTGATGATAATCAGTTGCCTGGAATAGCTGAATTGAAGAAGAAGAGCGCAAAATCTACAAGACCTTCCATCAAATCTCTTTTTGCTAACGAATCTGCAATGGCGACAAATCAACCCGTTCAAGGCAGCTTTTTGAAACTCTTGCCTCCCCAACTAGAAGTCCCCGAGAAACCGATCAGCGCCGTATTCCTCCGTCGAACTCGAATTCCCTCTCTTCTTCCACATGCAGCTCCGTCACTGTCCTCCATCGGCCATTCTTCCGGTTTCGGAGCTTCTGAGTCAGCTAAATCCGTGGTGGTTTGGTTCCATGTGTTGTTGATCACCAGTTGTTGTTGCGTCGTTTGCTTTTGGAGATCTTACTTCAAAGTGCTTCGCAGTGGAGTGAGAGTCGAGTGTGGAGTTCATGAAGAGTGGGGATTAGGTGACTTGGAGTTCCCGCTGGACCTGGAGATGTTGCAGCTCCCCGAGGTATCTTATTTTGCTCTGAAATCCAATCCTTATGTCGTTGAGGCGCTGTTTTCGCAGTGGCTTTCGCTTCCCGAGACTGGCCGACTGGTGAATTCTTTGATTACTGATGCGAAGTCCGGTGCTTCTTTGAATGTTGGCGGGAACTCTACTGGAATGGATGGTGTTTCTAACCATTCTCTACCTTCCATGTTTCCCGGTGGCAGTACACCTCCACTTTCACCACGCAGTGCATCCAGTTCCCCACGGATGGTGAAACAGAGGTTTGGACCTTCTTCGTTAGGCTCTCCACTTAAGTTGGTCTGTGAGCCAGCAAGAGAGGCTATACCACAGTTTTATTTTACAACTGGTTGTCCAGCACCGAATGCCACGACAGAAGATTTTCTATCTAAAGTGAATCAATTTTTTCTGTCTCGTTCGGATGGAGTGCAAATAAAGGAGTTTAAATCAGTCACGAAGGAGATCTGCAAGTTACCTTCATATCTCTCCACTACTCTTTTTAGGAAGATTGATGCTAACTGCAGCGGAAAAGTATCGAGAGAACAGTTCATCAATTATTGGATTACGAGCAATATGTTAACTATGGATTTAGCAACTCAAGTATTTACTATTCTCAAGGAGCCAGAGCGAAATTACCTTGTTCAGGATGATTTCAAACCTGCCTTACAAGAACTTTTGGCAACTCATCCGGGGTTGGAATTTTTGCAAAGTACACCAGAATTCCAGGAAAGATATGCTGAAACAGTCATATACAGGATATTTTACTATATTAACAGATCCAGTAACGGTCGTATTACCCTCAGGGAGTTGAAGCGTGGCAACTTAATTGCTGCAATGCAGCATGTGGACAAGGAAGAAGATATCAACAAAGTCCTGAAGTACTTCTCATACGAACACTTCTATGTCATATATTGCAAATTTTGGGAGCTTGACAATGATCATGATTTTTTTATCGAGAAAGAGAATGTTATCAAATATGGTAACCATGCTTTAACATATCGGATTGTCGATAGAATCTTTTCTCAGGTTCCAAGAAAATTTACTTGTAACGTTGAAGGGAGGATGGGGTATGAAGACTTTGTGTTCTTCATTTTGGCTGAAGAGGATAAATCATCTGAACCTAGCCTCGAGTACTGGTTCAAATGCATTGATCTAGACGGAAATGGAGTGCTCACAAGGAAAGAAATGCACTATTTTTTTGAAGAGCAGTTGCACCGAATGGAGTGTATGGCTCAGGAACCAGTGCTTTTTGAGGACATATTGTGCCAGATTTTTGATATGATCGGACCAGAGAATGAGGAATGCATAACATTGCGAGATATTAAAAACTGCAAACTTGCTGGACATGTTTTCAACATCCTTTTCAATCTCAACAAGTTCGTTGCTTTTGAAAGTCGTGATCCATTCCTAATCCGTCAGGAACATGAGGATCCAACTTTGACGGAATGGGATCGATTTGCACATAGAGAATATATTCGTCTTTCCATGGAAGAAGAAGCTGAAGATGCTTCAAATGCAAGTGATGCCTGGGATGAGTCACTTGAGGCTCCTTTTTGA 3543 41.89 MEATRRWFNKFRSKDKPKSSTNKESAGNARDASKAPTSEELPSNVTKQKVAAAKQYIENHYKKQMKSLEERRERRHVLEKKLADAEVSQEEQSNLLKHLEKKETEYMRLQRHKMGADDFEPLTMIGRGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKDGHMKLSDFGLCKPLDCSNLQEKDFSQGNNLSGALQSDGRPVASKRTQQEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGFPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEETENAIQTSSKSGPWRKYDSCHMGISFWGGKQTFGMSMMLSSKDVNFVGYTYKNLEIIDDNQLPGIAELKKKSAKSTRPSIKSLFANESAMATNQPVQGSFLKLLPPQLEVPEKPISAVFLRRTRIPSLLPHAAPSLSSIGHSSGFGASESAKSVVVWFHVLLITSCCCVVCFWRSYFKVLRSGVRVECGVHEEWGLGDLEFPLDLEMLQLPEVSYFALKSNPYVVEALFSQWLSLPETGRLVNSLITDAKSGASLNVGGNSTGMDGVSNHSLPSMFPGGSTPPLSPRSASSSPRMVKQRFGPSSLGSPLKLVCEPAREAIPQFYFTTGCPAPNATTEDFLSKVNQFFLSRSDGVQIKEFKSVTKEICKLPSYLSTTLFRKIDANCSGKVSREQFINYWITSNMLTMDLATQVFTILKEPERNYLVQDDFKPALQELLATHPGLEFLQSTPEFQERYAETVIYRIFYYINRSSNGRITLRELKRGNLIAAMQHVDKEEDINKVLKYFSYEHFYVIYCKFWELDNDHDFFIEKENVIKYGNHALTYRIVDRIFSQVPRKFTCNVEGRMGYEDFVFFILAEEDKSSEPSLEYWFKCIDLDGNGVLTRKEMHYFFEEQLHRMECMAQEPVLFEDILCQIFDMIGPENEECITLRDIKNCKLAGHVFNILFNLNKFVAFESRDPFLIRQEHEDPTLTEWDRFAHREYIRLSMEEEAEDASNASDAWDESLEAPF 1180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 904544 916764 - CmoCh17G001560.1 Cmo17g00156 400539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00156 1180 MobiDBLite consensus disorder prediction 1 47 - -
Cmo17g00156 1180 Gene3D - 957 1128 - -
Cmo17g00156 1180 Gene3D Transferase(Phosphotransferase) domain 1 203 436 - -
Cmo17g00156 1180 Pfam EF-hand domain pair 962 1062 IPR002048 GO:0005509
Cmo17g00156 1180 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 512 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cmo17g00156 1180 SUPERFAMILY EF-hand 949 1108 IPR011992 -
Cmo17g00156 1180 Pfam Protein kinase domain 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00156 1180 Gene3D - 869 956 - -
Cmo17g00156 1180 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Cmo17g00156 1180 ProSiteProfiles EF-hand calcium-binding domain profile. 1033 1068 IPR002048 GO:0005509
Cmo17g00156 1180 ProSitePatterns EF-hand calcium-binding domain. 1046 1058 IPR018247 -
Cmo17g00156 1180 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Cmo17g00156 1180 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B''EPSILON-RELATED 653 1180 - -
Cmo17g00156 1180 MobiDBLite consensus disorder prediction 22 47 - -
Cmo17g00156 1180 CDD STKc_NDR_like 117 503 - -
Cmo17g00156 1180 Gene3D Phosphorylase Kinase; domain 1 117 447 - -
Cmo17g00156 1180 Pfam EF-hand domain 858 947 IPR041534 -
Cmo17g00156 1180 SMART pkinase_C_6 419 504 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cmo17g00156 1180 PANTHER PHOSPHATASE 2A REGULATORY SUBUNIT-RELATED 653 1180 - -
Cmo17g00156 1180 ProSiteProfiles Protein kinase domain profile. 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00156 1180 SMART serkin_6 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00156 1180 MobiDBLite consensus disorder prediction 1161 1180 - -
Cmo17g00156 1180 MobiDBLite consensus disorder prediction 1 21 - -
Cmo17g00156 1180 Gene3D - 767 868 - -
Cmo17g00156 1180 Coils Coil 68 102 - -
Cmo17g00156 1180 SUPERFAMILY EF-hand 801 935 IPR011992 -
Cmo17g00156 1180 Pfam EF-hand domain pair 809 849 IPR002048 GO:0005509
Cmo17g00156 1180 SUPERFAMILY Protein kinase-like (PK-like) 94 468 IPR011009 -
Cmo17g00156 1180 MobiDBLite consensus disorder prediction 719 748 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g01054 Cmo17g00156 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01466 Cmo-Chr3:10538177 Cmo17g00156 Cmo-Chr17:904544 0 dispersed
Cmo05g00804 Cmo-Chr5:4732832 Cmo17g00156 Cmo-Chr17:904544 0 dispersed
Cmo10g00764 Cmo-Chr10:3533326 Cmo17g00156 Cmo-Chr17:904544 0 dispersed
Cmo11g00724 Cmo-Chr11:3495011 Cmo17g00156 Cmo-Chr17:904544 0 dispersed
Cmo12g00497 Cmo-Chr12:3056487 Cmo17g00156 Cmo-Chr17:904544 0 dispersed
Cmo12g00965 Cmo-Chr12:9001577 Cmo17g00156 Cmo-Chr17:904544 0 dispersed
Cmo17g00156 Cmo-Chr17:904544 Cmo17g01290 Cmo-Chr17:10140158 0 dispersed
Cmo06g01476 Cmo-Chr6:10614931 Cmo17g00156 Cmo-Chr17:904544 1.85E-23 transposed
Cmo17g00156 Cmo-Chr17:904544 Cmo08g01054 Cmo-Chr8:6806948 0 wgd
Cmo17g00156 Cmo-Chr17:904544 Cmo08g00273 Cmo-Chr8:1709636 6.52E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74992 PF00069 Pkinase 5.10E-65 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00156 K08790 - csv:101205120 1059.67