Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00164 ATGGGTTGCAACAAGACCATAGTATGGTTTCGGAGAGACCTCAGGATTGAGGACAACCCTGCTTTAACTGCTGCTGCTAGAGATGGTTTTGTATATCCTGTGTACATATGGTGTCCTAAAGAGGAGGGACAATTCTATCCTGGACGGGTATCAAGGTGGTGGCTGAAGCAATCACTTGCCCATTTAAAACAGTCATTGAAATCCCTTGGTTCGGACCTCGTGCTAATGAAAACTCAGAGTACTATTTTCTCTCTTCTGGAGTGTATCAATGCTATTGGGGCAACAAAAGTAGCATTTAACTGTCTCTACGATCCCATTTCACTTGTCCGAGACCACAATATTAAAGAAAAACTAGTTGAACTCGGAATTTCTGTACAGAGCTACAATGCAGATCTTTTATATGAGCCATGGGACGTATATGATGAAAATGGGAATGCTTTTACGACCTTCAAGGACTATTGGGGTAAATGTCTTCTTTTGCAGAAGGAATTTATTTCAACTCTCCCTCCATGGAAACTACAACATGCTGCAGGATCAGTGGGAAGTTGTTGCATTGAGGAACTAGGTCTTGAAAATGAATCAGAGAAATCTAGCAATGCATTACTAGCAAGAGCTTGGTCGCCAGGGTGGAGCAACGCTGATAAGGCTCTGGCTGAATTTGTAGAAAATCATCTGCTAGAATATGCGAAAAATAGGCAACAGCTGGGCGGTAGCTCGACATCTCTACTGTCCCCATACCTACATTTTGGGGAAGTAAGTGTCTGGAAGGTTTTCCAAAAAGTGAGAATGAAACAGATATTGTGGGCAAGAGAGGAAAACGCTGTAGGGGAACAAAGCACAAATCTGTTTCTCAGAGCTATAGGGCTCAGAGAGTATTCCCGTTATATATGTTTCAACTTTCCATTCACCCATGAGAGATCATTGCTGAGCAGCCTGAAGTTCTTCCCTTGGCATGCTAGCCAGAATAACTTTAAAGCTTGGAGGCAGGGTCGAACTGGCTACCCATTGGTTGATGCTGGAATGAGAGAGCTTTGGGCAACTGGATGGATACACAACAGAATAAGAGTGATTGTTTCTAGCTTTGCAGTAAAGGTTTTGCTTCTTCCTTGGAAATGGGGAATGAAGTATTTCTGGGACACTCTTTTAGATGCAGATTTGGAAAGTGATATCCTTGGTTGGCAATATATTTCTGGGAGTTTGCCAGACGGCCATGAACTTGAGAGATTGGACGATCCACAGATTCAAGGCTCAAAATACGATCCAGACGGAGAATATATTAGGCATTGGCTGCCTGAGCTAGCACGAATGCCGACCGAGTGGATTCATCATCCTTGGGATGCACCTCAGACTGTCCTAAAAGTTTCAGGAGTTGAGTTAGGTTTAAACTATCCTACACCGATAGTTGACTTAGACTTGGCTGCTAATCGATTGAGAGAAGCCATAATCAAAATGCGGGAAATTGAAGCAGCTGCTGGGGCAAATTCAAATGGTACAAATGAAGTTGTTATGGATAATGCAGATAGGATTCAATCCTTGGGTACTGCAAATGTTGTAGCAGAGCCAAAAACCTGTGCTACTTATTCTTCTAATGATCAGAAGGTACCCATGATTCAAACTTCAAAGGTTGATAATCCATTGAGTAGGAAACGGTCTAAGCCTATGGAAGAGAAAGGAGAATTTCAATATAATATTCGCAACGACGTACAAAGTGAAGCTGGGACGTCGAAACCAGACGAAGATTTATGCTCTACTGCTGAATCTTCATCATCTAAGAAGCCATCCACCAGCAGAACTTCCTTTTCTGTTCCACAGTTTTGTTCTTCATCAAAAGGGCTGCCAGAATCATCTGAAGGAACTACTGATAGATGA 1869 42.54 MGCNKTIVWFRRDLRIEDNPALTAAARDGFVYPVYIWCPKEEGQFYPGRVSRWWLKQSLAHLKQSLKSLGSDLVLMKTQSTIFSLLECINAIGATKVAFNCLYDPISLVRDHNIKEKLVELGISVQSYNADLLYEPWDVYDENGNAFTTFKDYWGKCLLLQKEFISTLPPWKLQHAAGSVGSCCIEELGLENESEKSSNALLARAWSPGWSNADKALAEFVENHLLEYAKNRQQLGGSSTSLLSPYLHFGEVSVWKVFQKVRMKQILWAREENAVGEQSTNLFLRAIGLREYSRYICFNFPFTHERSLLSSLKFFPWHASQNNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELERLDDPQIQGSKYDPDGEYIRHWLPELARMPTEWIHHPWDAPQTVLKVSGVELGLNYPTPIVDLDLAANRLREAIIKMREIEAAAGANSNGTNEVVMDNADRIQSLGTANVVAEPKTCATYSSNDQKVPMIQTSKVDNPLSRKRSKPMEEKGEFQYNIRNDVQSEAGTSKPDEDLCSTAESSSSKKPSTSRTSFSVPQFCSSSKGLPESSEGTTDR 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 955191 962950 + CmoCh17G001640.1 Cmo17g00164 400547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00164 622 Gene3D - 133 293 - -
Cmo17g00164 622 PANTHER CRYPTOCHROME 2B APOPROTEIN 1 582 - -
Cmo17g00164 622 Pfam DNA photolyase 6 159 IPR006050 -
Cmo17g00164 622 Gene3D HUPs 7 206 IPR014729 -
Cmo17g00164 622 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 501 - -
Cmo17g00164 622 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 6 173 IPR036155 -
Cmo17g00164 622 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 193 488 IPR036134 -
Cmo17g00164 622 PRINTS DNA photolyase signature 352 370 IPR002081 -
Cmo17g00164 622 PRINTS DNA photolyase signature 332 348 IPR002081 -
Cmo17g00164 622 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 4 133 IPR006050 -
Cmo17g00164 622 MobiDBLite consensus disorder prediction 563 615 - -
Cmo17g00164 622 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Cmo17g00164 622 MobiDBLite consensus disorder prediction 529 622 - -
Cmo17g00164 622 Coils Coil 470 490 - -
Cmo17g00164 622 Pfam FAD binding domain of DNA photolyase 283 480 IPR005101 -
Cmo17g00164 622 MobiDBLite consensus disorder prediction 545 562 - -
Cmo17g00164 622 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 5 481 IPR014134 GO:0009785|GO:0009882
Cmo17g00164 622 PANTHER CRYPTOCHROME 1 582 IPR002081 -
Cmo17g00164 622 MobiDBLite consensus disorder prediction 529 544 - -
Cmo17g00164 622 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00164 K12119 CRY2; cryptochrome 2 - cmo:103499419 1159.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01651 Cmo-Chr1:12513159 Cmo17g00164 Cmo-Chr17:955191 0 dispersed
Cmo08g00630 Cmo-Chr8:3828168 Cmo17g00164 Cmo-Chr17:955191 8.60E-49 dispersed
Cmo17g00164 Cmo-Chr17:955191 Cmo17g01059 Cmo-Chr17:8871559 4.69E-08 dispersed
Cmo17g00164 Cmo-Chr17:955191 Cmo09g00546 Cmo-Chr9:2606252 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g704 . . . . . Bpe14g01253 . . . Cmo17g00164 . . . . . . . . . . . . . . Cla06g00663 Cam06g0712 Cec06g0716 Cco06g0726 Clacu06g0702 Cmu06g0689 Cre06g1459 . . . . . . Chy05g00323 . . Blo07g00262 Bda11g00630 Bda13g00064 . Bpe13g00558 Bma02g00784 Bma06g01599 . . . . Cma17g00165 . Car17g00146 Cpe12g00142 . Bhi12g01623 . . . Hepe03g0282 . Lcy13g0375 . . . . . . . . . . Cme05g00565
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006638 1 7 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 0 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00164 Cmo_Chr17 FPKM 19.779425 18.530508 19.904169 19.756304 0.745126 0.0 0.808691 18.843599 16.416792 17.982151