Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00172 ATGGTTGCAGAGCCTTGGATTGTCAAAATGGGTAACCAGGTTAGCGCTAATCTCAAACAAGCCCTCCTCGAGCCTTCTAAGAACAAGAACAATGGCAATAATAAGCAAACAATCGGTATTCTTTCTTTTGAGGTTGCTAATATAATGTCCAAAACGATTTACCTTCATAAATCTCTGTCTGATTCTGCCATTTCTAAGCTCAAGAACGAGATCTTGAGCTCCGATGGTGTTAAAAACCTTGTCTCTTCTGATGATGTTCATCTTCTTGAGCTTGTGGTTCTTGAGAAGCTTGAGGATTTGAACCGTGTGGCTAATGTGGTATCTAGGTTTGGTAGGAAGTGTTCTCAACCTGCGCTACAAGGGTTTAAACATGTGTATTTGGATATCATTAATGGAGCTATAAATGTGAAGGAATTGGGGTTTTTGGTTAAGGATATGGAGGGGATGATGAGGAAAATGGAGAGGTTTGTGAATGTTACAGCGAATTTGTACACTGAAATGGAGGTTTTGAATGAATTAGAACAGGCTGCTAAGAAGTTTCAGAACAATCAGCATGAACAAACTAGAAAAGCTTATGAACAGAAACTCTTATGGCAAAAACAGGACGTGGGGCATTTGAAGGAGATTTCTTTATGGAATCAAACGTTTGATAAGGTTGTTGAATTGCTTGTAAGAACTGTTTGTACGGTTTATGCGAGGATTCATCATGTTCGGATCGATGCAGAGTCGATGGAATCGAAACGTGTGTTCATTGAAAGAGGCCATGGAGCGAGACGTGGGTCGAGTTTCAAATCTCAAGTTAGCTCGAAAAGAAGCGAGGTTCCATTGTTTGATGACTTCAATTTTCCTTGTGGAACGAATCCCGGGAGGGTTCTTATGGATTGCCTTAGTTTAAGTAGTTCTGGGGATGAGGATAGTTATGTCGACCACGACGATCTGAGCTGCCAACGCTCTGGTCGTAGCATTAGGAACAGTGGCTCCAGTCAGGTGCAGTTCTCTGTTCCATTTGGAGTGGATTTAAGACAAGCAAACAATGGAGGAAACTTCGGGTTCAAGAGTAGGTTATTATCGGTCTATGCACCGGTTTCGACTGTCGGAGGCTCGGCTCTTGCTTTACATTATGCAAATATCATCATTGTTATAGAGAAATTGCTTCGTTATCCTCATTTAGTTGGCGACGAAGCTCGGGACGATTTGTATGAGATGCTACCAACAAGTTTAAGATCATCCCTGAAAACACATTTGAAGTCTTATGTTAAGAACATGGCTATATATGATGCTCCTCTTGCCCATGATTGGAAGGAGACACTCGATGGGATCTTGAGCTGGCTCGCTCCGTTGGCACACAACATGATTCGATGGCAAACCGAGCGTAATTTTGAGCAACATCAGATCGTGACTCGAACGAATGTCTTGCTGATCCAAACTTTGTACTTTGCCGATCGAAAGAAGACCGAGGAAGCCATATGTGAGCTTCTTGTTGGATTGAATTACATATGTCGCTACGAGCATCAGCAAAATGCATTGCTCGATTGTGCGAGTAGTTTCGACTTTGAAGATTGTATGGAGTGGCAGTTGCAATGTAAAGCTTCTGTTTTAAAATTTTCCACTAATCTGGCTAATTCTAATCCGTGGTGGGCTAGTCGGGTGGGCTTTCCGGCCACCGACCCGGTTTCTACCACCGTCGGCGGCTGCGGAACAGAGCACGACAACGATGAAGACGAGCTGAAGGAAGGTAGCGTGCTGGTTGGGAACCGCCGAACGAGAGGGCGGCCACCGGGAGCGAAGAACAAACCAAAACCCCCAATCATCGTCACGCGGGACAGTCCTCACGCGCTTCGCACGCACGTGATCGAGATCGCCGGAGGAGCCGACGTGGCGGACAGCATAAACCAATTCTCCAGCCGCCGACAACGTGGGGTTTGTGTTCTCAGCGGAAACGGCACGGTTGCCGACGTGACTCTCCGGCAATCCGCCACCGTGATCCAACTTCACGGCCTGTTCGATATTCTATCACTGAGCGGCTCTTTTCTTCCCGGTCCAGCCATCCCCTGTTCCACTAGACTGACCGTGTACCTCGCCGGTGGTCAAGGGCAGGTGGTCGGAGGGACAGTGGTGGGCCCTTTGTTGGCAGCTGGGCCTGTCATTTTGATAGCTGCTACTTTTGCTAATGCAATTTATGAGAGATTGCCTTTACAAGACGACCATGATTACCAACAAACAGAGGTTTCTCCGGCCGCTATAGATGGCGGAGAAGTGGAGGAGCCGCCGCTTCCGCCGCCGTATCCCCGGACGACAACTTCAATTTATGACTTGATGACACCAAATAATGATCATGAAATGGGAATTGATAAGGTTTGGTTGGGCTCAGCTTAG 2376 46.55 MVAEPWIVKMGNQVSANLKQALLEPSKNKNNGNNKQTIGILSFEVANIMSKTIYLHKSLSDSAISKLKNEILSSDGVKNLVSSDDVHLLELVVLEKLEDLNRVANVVSRFGRKCSQPALQGFKHVYLDIINGAINVKELGFLVKDMEGMMRKMERFVNVTANLYTEMEVLNELEQAAKKFQNNQHEQTRKAYEQKLLWQKQDVGHLKEISLWNQTFDKVVELLVRTVCTVYARIHHVRIDAESMESKRVFIERGHGARRGSSFKSQVSSKRSEVPLFDDFNFPCGTNPGRVLMDCLSLSSSGDEDSYVDHDDLSCQRSGRSIRNSGSSQVQFSVPFGVDLRQANNGGNFGFKSRLLSVYAPVSTVGGSALALHYANIIIVIEKLLRYPHLVGDEARDDLYEMLPTSLRSSLKTHLKSYVKNMAIYDAPLAHDWKETLDGILSWLAPLAHNMIRWQTERNFEQHQIVTRTNVLLIQTLYFADRKKTEEAICELLVGLNYICRYEHQQNALLDCASSFDFEDCMEWQLQCKASVLKFSTNLANSNPWWASRVGFPATDPVSTTVGGCGTEHDNDEDELKEGSVLVGNRRTRGRPPGAKNKPKPPIIVTRDSPHALRTHVIEIAGGADVADSINQFSSRRQRGVCVLSGNGTVADVTLRQSATVIQLHGLFDILSLSGSFLPGPAIPCSTRLTVYLAGGQGQVVGGTVVGPLLAAGPVILIAATFANAIYERLPLQDDHDYQQTEVSPAAIDGGEVEEPPLPPPYPRTTTSIYDLMTPNNDHEMGIDKVWLGSA 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1007279 1011428 + CmoCh17G001720.1 Cmo17g00172 400555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00172 791 Pfam Protein of unknown function (DUF668) 364 453 IPR007700 GO:0045927
Cmo17g00172 791 SUPERFAMILY AF0104/ALDC/Ptd012-like 612 734 - -
Cmo17g00172 791 Coils Coil 170 190 - -
Cmo17g00172 791 PANTHER PLANT/PROTEIN (DUF668) 1 528 - -
Cmo17g00172 791 PANTHER BNAC09G50660D PROTEIN 1 528 - -
Cmo17g00172 791 Pfam Plants and Prokaryotes Conserved (PCC) domain 614 723 IPR005175 -
Cmo17g00172 791 ProSiteProfiles PPC domain profile profile. 610 744 IPR005175 -
Cmo17g00172 791 Gene3D - 613 745 - -
Cmo17g00172 791 CDD DUF296 614 694 IPR005175 -
Cmo17g00172 791 Pfam Domain of unknown function (DUF3475) 40 96 IPR021864 GO:0045927
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g01071 Cmo17g00172 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02654 Cmo-Chr4:19299584 Cmo17g00172 Cmo-Chr17:1007279 3.64E-39 dispersed
Cmo08g01072 Cmo-Chr8:6910716 Cmo17g00172 Cmo-Chr17:1007279 2.92E-58 dispersed
Cmo14g00254 Cmo-Chr14:1165710 Cmo17g00172 Cmo-Chr17:1007279 9.00E-61 dispersed
Cmo16g00180 Cmo-Chr16:809111 Cmo17g00172 Cmo-Chr17:1007279 1.97E-26 dispersed
Cmo17g00172 Cmo-Chr17:1007279 Cmo06g01155 Cmo-Chr6:8855557 1.45E-61 dispersed
Cmo18g01217 Cmo-Chr18:12094057 Cmo17g00172 Cmo-Chr17:1007279 2.21E-34 dispersed
Cmo07g01052 Cmo-Chr7:5348221 Cmo17g00172 Cmo-Chr17:1007279 1.58E-70 transposed
Cmo17g00172 Cmo-Chr17:1007279 Cmo06g01345 Cmo-Chr6:9973532 1.22E-64 wgd
Cmo17g00172 Cmo-Chr17:1007279 Cmo08g01071 Cmo-Chr8:6906698 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00172 - - csv:101220789 904.434