Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00174 ATGGAGACTGAAGGTACAGATGTTTGCATGGATAAAGAGCCAGATCGTGTTATAACATATTCCTCTAGAGGTGGTTCCCATGCTTCATCTTGTGAAGATAGCCTCAGTCATCAGGATGTCATGGAGTCATTTGGCGAAATAAATGGGGATCACGATATCAACAATTCAGAAGAGGGAAGTGAATCAAAGGAATATGAAGTGAAGGAATGTACAAATGAAAAATCAATCAAGATTCCTGAAATGCACCCTTCAAAGAAACCAGGCCAACAGCAAAATGTGGTTAGCAGCTTGACTAATGAAAAAGAGAGACTGGAGGAGAAGGTACAAGAAGGAAAGAACGATGACAAATTACTGTTAACTGTGAACTCATTGAAATCTTCTGCTGGAAATGCTCGTTCAAGACATACTGTTCCACAGCCATTTGCCTTGGCAACGGAAAAGCGTGCTTCATCGGGTACTCGACTTCCCAGCGCTATCACCACTGAAAAATCTACCAAAAACAATATTCGGCCTGCAAAGACCAAATCAAATCAGCCCACATCTCCTAGGGTGTTGAGGAAGCCACTGCAACCTAATAACAAGAAGCATGCTGATGAGGAAGATTCCTGCTCTGCGGTTTCCGTTGCAGCATCAACTCGGGCTATCAAGACCAGAATTACTGTTGCATCAGTTCCTGCATTGAGGTGCACAGAGCGTGCAGAGAAAAGGAAGGAGGTACTACAGCCAGATCATCTTATCTTTAATTCGAAATTGGAGGAAAAACTCCAGGCTCTGGTGGCTGAGAAGACCGAGTGTGAGACGAAGTCCAAGTTGATTCCTGAAGTTTATTCTAAAGTTATTCTCTTTCTTTCCTTGTCACCTTCATTAATCTTCCCAAATTTGAAGGAAGAGACTGAGGCCGCTATCAAACAACTAAGAAAGAGTTTATTATTCAAAGCAAATCCAATGCCAAGCTTCTACCACGATGGGCCTCCTGCCAAGGCTGAGCTGAAAAAGCTCCCACCAACTCGTGCAAGGTCACCTAAACTTGGCCGACGTAAGAGTTGCAACAATGCGGTTCTATCCAATGGAAACAAGATAAAAGTCAGTCTTGGCAAGGGAAATGGCCATCGTACCGACAGTTCCAACAGAGATACTATTGCATTGGATGTCACCGAGAATCAGAGCAATGTCATTCGCTTTGTAGAAAACGAGCTGAAGCAAGGAGAAGCCTTTTGCGAGTACACTCTTCGGTCTTCGGTCGATGCCTCCTCCTCCCACTCTTTTGGTCGGAACCTCCTCCTCGCCAGTTGCCACACGGTTATTCTTCCTTCCTTCCACAGTTATCCTCCTCGTAATAGAGATCTCGTCGAAAATGGCGGCGGAATCGCCAATCAGGCTCGGATCATCGCCGTGTCGTTGGTCGGAATCGTGGCGGCCGCCGGAACGCGTTACCACTGGGGCAGGAAATTGAGGCCGTCGGCCGTGATCGTAGATCAGAAAATCATTCCGGTGATCGGACGGACGGAATCCGGCCGGTCCGGAAACATTGAAGCGTTCCCTCACTATGTTAGGTCGAGGCAATTAGGGTTTATGGATGTCGGGGAGTGCCCGAGGTTGGCGAAGTTGATGAACGATTATTTGAAGAAGAAAAAAGGATGTGAAGAATCGATATACGAGTATTTGATTGATGAAAAGAATGGTGATTCGTTATACGTGAAGCTGATTGAAGAGTTAGAGACGTGTATTTTGAGCTACTTTGCTTTTCATTGGGACAAAGCTCCTCAAATGGTTTCTCAGGCATTGACGGATGAATCTGAGCACAAGGCAAAGTTCAAAGGCTTAGTGATGGCCGCCACCAGGAAGCAGAGGTTCGAGAGGGTGACAAAGGAGCTGAAAATGACGAGGGTTATATCGACTCTAGTCGACGAGATGAAAGCAATTGGCGGCGGCGAGGCTGATTCTAAATGCACCGATGTTATGGCGCCCGTGGCTCTTAGTCGGAGGAGCCCCGTTCTCCTCCTCATGGGCGGCGGAATGGGAGCCGGCAAAAGCACTGTCCTTAAAGATATCCTCCAAGAACCGTTTTGGTCGGAAGCCGGAGCAAAAGCCGTAGTGGTAGAGGCGGATGCTTTCAAAGAAACCGACGTCGTTTATAAAGCAATTAGCTCCATGGGCTGCCCCGATGACATGCTTTCGTCCTCCGAGCTGGTGCACCAGTCATCGACCGACGCAGCATCGTCGTTGTTGGTGACGGCGCTAAACGAAGGTAGGGATGTGATCATGGATGGAACTCTTTCATGGGAGCCGTATGTGGAACAGACGGTTGAGATGGCGAGAAATGTTCACAAGCATCGGTATCGCATGGGGGTTGGCTACAAAGTTGCTGAGGATGGCACCATCACTGAAAATTACTGGGAACAAGTGAGCCGAGATGAAGAACATCGATATGATTTTGATGGGATAGTTGAGAAAGATCGAAAGCCTTACCGAATTGAATTGGTTGGAGTTGTTTGTGACCCGCATTTGGCCGTTATTCGAGGCATAAGGTATGAACGACTTAACGTTAAATTACAAATTTCACTCTATTCCACCAATGTCCTCGGCAGTCCACCAAAGTTGATTGGGTGGAAAAACGGAGACACCAAGTTACTAGTGGATCCCGAGGAAATCAAATGTATTTCAGTGACGAGTAGGATGAAGGAGAATGCAGCTTCAGTTTACGAACTTTACGAAGATGCAAGCGTTTTAAGTGAAGAAGGTTCTCTATGGAAAGACACTGTCATGTCATCTTCTAGGGCCAATGTTCAAATGGAGTTGAAGGCTTCCATTCAAGCCATTGAATCAAAATAA 2832 46.5 METEGTDVCMDKEPDRVITYSSRGGSHASSCEDSLSHQDVMESFGEINGDHDINNSEEGSESKEYEVKECTNEKSIKIPEMHPSKKPGQQQNVVSSLTNEKERLEEKVQEGKNDDKLLLTVNSLKSSAGNARSRHTVPQPFALATEKRASSGTRLPSAITTEKSTKNNIRPAKTKSNQPTSPRVLRKPLQPNNKKHADEEDSCSAVSVAASTRAIKTRITVASVPALRCTERAEKRKEVLQPDHLIFNSKLEEKLQALVAEKTECETKSKLIPEVYSKVILFLSLSPSLIFPNLKEETEAAIKQLRKSLLFKANPMPSFYHDGPPAKAELKKLPPTRARSPKLGRRKSCNNAVLSNGNKIKVSLGKGNGHRTDSSNRDTIALDVTENQSNVIRFVENELKQGEAFCEYTLRSSVDASSSHSFGRNLLLASCHTVILPSFHSYPPRNRDLVENGGGIANQARIIAVSLVGIVAAAGTRYHWGRKLRPSAVIVDQKIIPVIGRTESGRSGNIEAFPHYVRSRQLGFMDVGECPRLAKLMNDYLKKKKGCEESIYEYLIDEKNGDSLYVKLIEELETCILSYFAFHWDKAPQMVSQALTDESEHKAKFKGLVMAATRKQRFERVTKELKMTRVISTLVDEMKAIGGGEADSKCTDVMAPVALSRRSPVLLLMGGGMGAGKSTVLKDILQEPFWSEAGAKAVVVEADAFKETDVVYKAISSMGCPDDMLSSSELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWEPYVEQTVEMARNVHKHRYRMGVGYKVAEDGTITENYWEQVSRDEEHRYDFDGIVEKDRKPYRIELVGVVCDPHLAVIRGIRYERLNVKLQISLYSTNVLGSPPKLIGWKNGDTKLLVDPEEIKCISVTSRMKENAASVYELYEDASVLSEEGSLWKDTVMSSSRANVQMELKASIQAIESK 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1018721 1030362 + CmoCh17G001740.1 Cmo17g00174 400557

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00174 943 MobiDBLite consensus disorder prediction 150 187 - -
Cmo17g00174 943 MobiDBLite consensus disorder prediction 51 81 - -
Cmo17g00174 943 Coils Coil 248 268 - -
Cmo17g00174 943 Gene3D - 647 934 IPR027417 -
Cmo17g00174 943 PANTHER UNCHARACTERIZED 854 942 IPR044802 -
Cmo17g00174 943 MobiDBLite consensus disorder prediction 126 201 - -
Cmo17g00174 943 MobiDBLite consensus disorder prediction 46 111 - -
Cmo17g00174 943 PANTHER UNCHARACTERIZED 458 844 IPR044802 -
Cmo17g00174 943 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 458 844 - -
Cmo17g00174 943 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 854 942 - -
Cmo17g00174 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 657 798 IPR027417 -
Cmo17g00174 943 Coils Coil 94 114 - -
Cmo17g00174 943 Pfam Zeta toxin 659 772 IPR010488 GO:0005524|GO:0016301
Cmo17g00174 943 Pfam Targeting protein for Xklp2 (TPX2) domain 295 328 IPR027329 -
Cmo17g00174 943 Pfam Targeting protein for Xklp2 (TPX2) domain 226 270 IPR027329 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00174 - - - csv:101217539 762.681
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01076 Cmo17g00174 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00333 Cmo-Chr2:1721522 Cmo17g00174 Cmo-Chr17:1018721 1.05E-07 dispersed
Cmo11g00996 Cmo-Chr11:5345580 Cmo17g00174 Cmo-Chr17:1018721 1.41E-43 dispersed
Cmo12g01152 Cmo-Chr12:10435044 Cmo17g00174 Cmo-Chr17:1018721 1.47E-30 dispersed
Cmo14g00376 Cmo-Chr14:1742428 Cmo17g00174 Cmo-Chr17:1018721 1.60E-18 dispersed
Cmo17g00174 Cmo-Chr17:1018721 Cmo20g00775 Cmo-Chr20:3894287 0 dispersed
Cmo14g01816 Cmo-Chr14:13859755 Cmo17g00174 Cmo-Chr17:1018721 1.61E-174 wgd
Cmo17g00174 Cmo-Chr17:1018721 Cmo06g01352 Cmo-Chr6:10012564 2.36E-134 wgd
Cmo17g00174 Cmo-Chr17:1018721 Cmo08g01076 Cmo-Chr8:6931946 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g620 . . . . . Bpe14g01230 . . Cmo08g01076 Cmo17g00174 . . . . . . . . . . . . . . Cla06g00640 Cam06g0684 Cec06g0687 Cco06g0693 Clacu06g0670 Cmu06g0662 Cre06g1430 . . Cone7ag0300 Cone4ag0301 . Csa02g01086 Chy05g00348 . Blo02g00609 . . . . . . . Sed09g0705 . . Cma08g01104 Cma17g00176 Car08g00977 Car17g00158 Cpe12g00152 Cpe17g00179 Bhi12g01656 Tan06g2442 Cmetu05g0483 Lac12g2205 Hepe03g0258 . Lcy13g0344 . . . . . . . Lsi09g01259 . . Cme05g00536
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000661 0 3 3 1 2 3 6 3 3 3 3 3 5 3 3 5 3 4 5 3 3 3 3 3 3 3 3 7 5 3 100
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00174 Cmo_Chr17 FPKM 10.469565 17.247858 9.291196 13.011057 17.900126 6.573329 14.945877 3.102298 2.855513 2.342341