Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00176 ATGGATGATACTTTTCCAGTAGAATTCTGGCATAATGATCTCTTCTGGCTCGATGCCCCCATCTCCGTCCCCGTCCCCGTCTCCGCTCCCGCCCAACAACAAAAAAGTGCTTTCGTACCATATCTGTCACGACCCAATTTTCGAATCGAGCAAAAAAACAAACTCGCCGCCCCCGCCGCCTCTAATTCCGTTAACAAACGGGTGATTGAGTACTGGAGAAAGCAATGGCATGAGAAGAAAGAAGCGGCAGCTCTAGGCGATCTAGAGAGAGAGAAATGTCACAGGCACATGATGAACGAGAGGACGAGAAGAGAGAGAGAGAAACAGAGCTATTTGGGAGTCCACTCCCTGCTTCCCAAGAAAACTAAGAATGATAAGAACTCCATAGTTCAAGCGGCGGCGAGGACGATTCAAGAGCTGAGAGCCTCGGAGGAGATGTTAAAGAGGAGAAACTCAGAGCTGGAAATGGCGATTGCAGCGAAGAACAGAGAGAATGCGAAAGGAACAAAACCCATAAGGTTGGAATGGCCCAATCCTTCAGCTGGGATCGATTCAATGCTGGCTGTTCTTAATGTTCTTAAAACTGGACGCATAAATCCCAAAGCCATTCATGCCAATTTCTTCAACTCTCTGTTTTCAGCCCAATTAGCCATTGATGATACCCACATGGGAGGAGCCGAAGTGGAAAGAGTGTTGCAGGCGACGGTAAGGGAAGCAGATGGGAGATTTCGAAGGCAATGCTAG 744 48.25 MDDTFPVEFWHNDLFWLDAPISVPVPVSAPAQQQKSAFVPYLSRPNFRIEQKNKLAAPAASNSVNKRVIEYWRKQWHEKKEAAALGDLEREKCHRHMMNERTRREREKQSYLGVHSLLPKKTKNDKNSIVQAAARTIQELRASEEMLKRRNSELEMAIAAKNRENAKGTKPIRLEWPNPSAGIDSMLAVLNVLKTGRINPKAIHANFFNSLFSAQLAIDDTHMGGAEVERVLQATVREADGRFRRQC 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1033327 1034281 - CmoCh17G001760.1 Cmo17g00176 400559

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00176 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 140 IPR011598 GO:0046983
Cmo17g00176 247 Coils Coil 130 164 - -
Cmo17g00176 247 PANTHER TRANSCRIPTION FACTOR BHLH92 1 243 - -
Cmo17g00176 247 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 243 IPR044658 -
Cmo17g00176 247 Pfam Helix-loop-helix DNA-binding domain 92 140 IPR011598 GO:0046983
Cmo17g00176 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 89 156 IPR036638 GO:0046983
Cmo17g00176 247 Gene3D - 89 166 IPR036638 GO:0046983
Cmo17g00176 247 CDD bHLH_AtbHLH_like 96 147 IPR045239 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00176 - - - bhj:120068148 314.694
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01078 Cmo17g00176 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00176 Cmo-Chr17:1033327 Cmo07g00614 Cmo-Chr7:2765688 1.48E-06 dispersed
Cmo17g00176 Cmo-Chr17:1033327 Cmo08g01078 Cmo-Chr8:6942893 2.25E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g612 . . . . . . . . Cmo08g01078 Cmo17g00176 . . . . . . . . . . . . . . Cla06g00637 Cam06g0681 Cec06g0684 Cco06g0690 Clacu06g0667 Cmu06g0659 Cre06g1427 . . . Cone4ag0295 . Csa02g01090 Chy05g00351 . . . . . . . . Bma06g01583 . . . Cma08g01106 Cma17g00179 Car08g00979 Car17g00161 Cpe12g00155 . . . . . . . . . . . . . . . Lsi09g01263 . . Cme05g00532
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008643 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 4 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00176 Cmo_Chr17 FPKM 32.177906 34.109016 8.059571 6.269753 15.829064 16.562162 14.255096 4.259132 3.975791 3.848871