Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00183 ATGGCTCGGGACGGGCATGTAGTGCCGGTGGATCCACAGACGACGCTCACTGTGAAGAAGAAGAAGCAATCTTCTCGGAATTGGATTCTGCTGGATTGTACGGGCCAAGGCACCGTCCTCGATGCCGACAAGTATCAAATTATGCATCGGGTTCAAATTCATGCGCGCGATCTTCGGATTCTTGACCCTTTGCTTTCTTATCCCTCCACGATTTTGGGGCGTGAGAGGGCCATTGTTCTTAATCTCGAGCATATAAAGGCGATCATTACTGCTGAAGAGGTTTTTCTTAGAGATCCGACAGATGAACATGTCATCCCTGTGGTTGAGGAGCTTCAGAGGCGGCTGCCTCCTTCTAATGCGGTCCAGCTTCATGTTCAAGGAGATGGGAAAGCAAATCAGGGTCCGCAACACGACGGTGAAGCTGAAGAAGATGACTCGCCATTTGAATTTCGTGCGCTCGAGGTAGCTTTGGAAGCTATATGCAGTTATCTTGCTGCACGAACAACTGAGCTCGAGACTGCTGCTTATCCTGCCTTGGATGAGCTTACTGCCAAGATTAGTAGCCGAAACTTGGACAGAGTTCGTAAATTGAAGAGTGCAATGACGAGGCTGACTGCGAGGGTTCAAAAGGTGAGAGATGAGCTCGAACAATTACTGAATGACGACGATGATATGGCAGACCTTTACTTGTCAAGAAAGATGAATTCGTCTTCTCCTGTAAGTGGTTCTGGTCCTGCCATTTGGTTTCCTGCCTCTCCTACCATTGGTTCAAAGATATCAAGAGCGAGCCGAGCAAGTATGGCAACTGTACGTGGGGATGAGGATGACATCGAGGAGCTCGAAATGTTACTGGAGGCTTACTTTATGCAGATTGATGGTACATTGAACAAATTAACTACACTGCGAGAATACATTGATGACACAGAAGATTATATCAATATCCAGCTTGACAATCACCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGCTCTGGAACTGTTTGTTTGTCTGTCTATTCTTTGGTGGGTGCAATATTCGGCATGAACATTCCATACACTTGGAATGAAAATCACGAGTACATGTTTAAATGGGTTGTCATCGTTTCTGGAGTAGCTTGTGCGTTAATGTTCGTCGCAATTATTTACTATGCTCGCCTCAAAGGTTTGGTCGGATCTTGA 1182 45.94 MARDGHVVPVDPQTTLTVKKKKQSSRNWILLDCTGQGTVLDADKYQIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVFLRDPTDEHVIPVVEELQRRLPPSNAVQLHVQGDGKANQGPQHDGEAEEDDSPFEFRALEVALEAICSYLAARTTELETAAYPALDELTAKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLNDDDDMADLYLSRKMNSSSPVSGSGPAIWFPASPTIGSKISRASRASMATVRGDEDDIEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSVYSLVGAIFGMNIPYTWNENHEYMFKWVVIVSGVACALMFVAIIYYARLKGLVGS 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1083418 1087069 - CmoCh17G001830.1 Cmo17g00183 400566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00183 393 Gene3D Magnesium transport protein CorA, transmembrane region 104 323 - -
Cmo17g00183 393 PANTHER MAGNESIUM TRANSPORTER MRS2-I 1 393 - -
Cmo17g00183 393 Gene3D - 14 99 - -
Cmo17g00183 393 Pfam CorA-like Mg2+ transporter protein 273 380 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cmo17g00183 393 CDD Mrs2_Mfm1p-like 28 390 IPR039204 -
Cmo17g00183 393 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 1 393 IPR039204 -
Cmo17g00183 393 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 329 381 IPR045863 -
Cmo17g00183 393 Coils Coil 194 221 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g01086 Cmo17g00183 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00575 Cmo-Chr4:2868516 Cmo17g00183 Cmo-Chr17:1083418 5.48E-107 dispersed
Cmo14g01066 Cmo-Chr14:5873476 Cmo17g00183 Cmo-Chr17:1083418 2.53E-118 dispersed
Cmo16g00423 Cmo-Chr16:1976093 Cmo17g00183 Cmo-Chr17:1083418 2.27E-92 dispersed
Cmo17g00183 Cmo-Chr17:1083418 Cmo19g00556 Cmo-Chr19:6400264 2.46E-86 dispersed
Cmo19g00057 Cmo-Chr19:317618 Cmo17g00183 Cmo-Chr17:1083418 8.03E-178 transposed
Cmo17g00183 Cmo-Chr17:1083418 Cmo08g01086 Cmo-Chr8:6985242 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00183 K16075 - csv:101203841 689.878