Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00188 ATGGAATCCAAGCCTGCGTTTCAGAGCGATCTCAACCTCGAAGCCACCGAGCTTCGTCTCGGACTTCCCGGAATCGCCACTGAAACAGACGACACCCTGGAGAACTCACCCGGGCTTAAAACTAATAACAAGAGAAATTTACAGAATGACTCTGCTCCTCCCCCAAAGGCTCAGGTTGTTGGGTGGCCGCCGGTTAGATCTTTCCGGAAAAATACTCTTCAGATGAAGAAACCGGCGACGGCGACGGCGGCGGACTACGGCGGAGGATTCTTCGTGAAAGTGAGTATGGATGGCGCTCCTTATTTGAGGAAGATCGATTTGGGTCTCTACGAAGGCTACCCAGAACTTCTCAAGGCCTTGGAAGACATGTTCAAGTTCACCATCGGTAAGAAAACTCCTGAAGTAATCAAATTTGGTATCACAGGTCAGTACTCTGAGAGGGAAGGGTATAAGGGATCTGATTTTTCGCTAACATACGAAGATAAAGACGGGGATTGGATGCTCGTCGGCGATGTTCCATGGCAAATGTTCATTTCATCTTGTAAGAGGATGAGAATCATGAAAGGATCGGACGGTTGTGATGTATGA 588 48.47 MESKPAFQSDLNLEATELRLGLPGIATETDDTLENSPGLKTNNKRNLQNDSAPPPKAQVVGWPPVRSFRKNTLQMKKPATATAADYGGGFFVKVSMDGAPYLRKIDLGLYEGYPELLKALEDMFKFTIGKKTPEVIKFGITGQYSEREGYKGSDFSLTYEDKDGDWMLVGDVPWQMFISSCKRMRIMKGSDGCDV 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1108907 1110256 + CmoCh17G001880.1 Cmo17g00188 400571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00188 195 Pfam AUX/IAA family 40 192 IPR033389 -
Cmo17g00188 195 MobiDBLite consensus disorder prediction 29 53 - -
Cmo17g00188 195 ProSiteProfiles PB1 domain profile. 89 189 IPR000270 GO:0005515
Cmo17g00188 195 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 191 IPR003311 GO:0005634|GO:0006355
Cmo17g00188 195 PANTHER AUXIN-RESPONSIVE PROTEIN 4 191 - -
Cmo17g00188 195 SUPERFAMILY CAD & PB1 domains 83 188 - -
Cmo17g00188 195 Gene3D - 85 195 - -
Cmo17g00188 195 MobiDBLite consensus disorder prediction 24 59 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00188 K14484 IAA; auxin-responsive protein IAA - csv:101204324 291.197
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01357 Cmo17g00188 CCT
Cmo14g01809 Cmo17g00188 CCT
Cmo14g01809 Cmo17g00188 ECH
Cmo06g01357 Cmo17g00188 ECH
Cmo08g01090 Cmo17g00188 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00948 Cmo-Chr6:7324151 Cmo17g00188 Cmo-Chr17:1108907 6.81E-90 dispersed
Cmo17g00188 Cmo-Chr17:1108907 Cmo19g00055 Cmo-Chr19:310909 2.86E-51 dispersed
Cmo14g01809 Cmo-Chr14:13840881 Cmo17g00188 Cmo-Chr17:1108907 5.14E-75 wgd
Cmo17g00188 Cmo-Chr17:1108907 Cmo17g01193 Cmo-Chr17:9586318 1.42E-64 wgd
Cmo17g00188 Cmo-Chr17:1108907 Cmo06g01357 Cmo-Chr6:10040807 2.17E-66 wgd
Cmo17g00188 Cmo-Chr17:1108907 Cmo08g01090 Cmo-Chr8:7001953 3.71E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g603 . . Bda03g00851 . . Bpe14g01225 Bma04g00752 Bma05g01078 Cmo08g01090 Cmo17g00188 Cma06g01345 Cma14g01773 Car06g01166 Car14g01595 . . . . . . . . . . Cla06g00624 Cam06g0663 Cec06g0666 Cco06g0673 Clacu06g0650 Cmu06g0643 Cre06g1411 . . Cone7ag0293 Cone4ag0288 . Csa02g01107 Chy05g00367 Cme06g00549 Blo02g00604 Blo07g00242 Bda11g00609 . Bpe05g00869 Bpe13g00578 Bma02g00811 Bma06g01581 Sed09g0725 Cmo06g01357 Cmo14g01809 Cma08g01114 Cma17g00191 Car08g00997 Car17g00169 . Cpe17g00171 Bhi12g02258 Tan06g2467 Cmetu05g0496 . Hepe03g0246 . Lcy13g0326 Cla05g00491 Cam05g0536 Cec05g0547 Cco05g0548 Clacu05g0533 Cmu05g0505 Cre05g0574 Lsi09g01279 Csa03g01266 Chy06g00520 Cme05g00515
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000222 1 4 4 4 3 5 8 5 5 5 5 5 10 5 5 10 5 5 8 5 5 5 5 5 6 5 5 13 10 3 169
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11366 PF02309 AUX_IAA 7.00E-60 CL0072 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00188 Cmo_Chr17 FPKM 19.695473 20.423174 11.144138 8.837572 12.986939 8.904855 12.492839 7.838572 10.789759 7.822661