Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00189 ATGGCGTTGGCTAGCACTTACTCCATTGGTCGGATCAACTTCCTTCGTCTTCCCCTCTTCGCCACTGCTGCTACTGCTCCTCATTCTCAGAGCTCTCAATTTCTCAGAGCCACCTGCCTCTTCTCTAGAAAACTGTCAACTTCCTTGGCCATGGACGGTTCAAAGATAAGTGCAGTTGTTGAGGAGTTTCCATCTGGGATTGATCCAGCAACTGAGGAAGAATATGTAGAACAGTCCAAATTACTTGAAGAATTCACAAAAATTCCTAACTTTGATAAGGCATGGACGTTTAAGTCTGATAGTGGAGACTCCGTGGTAACGTTTTCAATTAGCCAAGCAAATCTTCTAGCAAATAAGAAGAGAAAATATACTTTGTCAGCTCACATTTCCGAGGGAAATGACGACAGTGAAGTAAACTTTAAATGGACGCCATTCCCTGTTGAAATGGTTGGAATCTCTACAATAGTGCCATCGCCAGCAGGCTCAAAATTTCTTGCAGTTCGTAATCCTGAAAATGATTCTCCAGTTCAATTGGAAATTTGGAGTGCAGGTCAACTTGAAAAGGAGTTTCACATCCCCCAATCTGTTCATGGCTCAATATATACTGATGGATGGTTCGAGGGAATCTCTTGGAACTCAAATGAAACTTACATTGCTTATATTGCGGAGGAACCTTCTCCCTCCAAACCAACGTTTACTCTTTCTGGATATCAAAAAGGTTGCTCAACAGACAAGGATTCTACCAATTGGAAAGGTCAAGGGGATTTTAAGGAAGAATGGGGGGAAGCTTATGCAGGTAAAAGGCAGCCTGCTCTCTTTGTCGTCAATATTGACAGTGGAGAGGTAAAGCATGTGAAAATAAGCGAGCATTCTTTGAGTTTGGGTCAAGTTGTATGGGCTCCATCTATTGGCGAGCATCAATATTTGGTTTTTGTTGGATGGTCACCAGAGCCTCGAAAACTTGGTATGATCTACTGTTATAATCGGCCTTGTGCATTATATGCAGTTAAGGCCCCGGAGTTTGGATCAGAAGTCAATGAACATAAACTCAAAGATGAATCAAAAGAGGATTTTCCCATCTATAATCTAACTCAGAACATAAGCAGTGCCTTCTCTCCTCGGTTCAGCCCAGATGGAAAGTCACTTGTATTTTTATCTGCACACTCTTCTGTGAACACTGGCGCCCATTCCGCAACAAATTCTCTTCACAGAATCGACTGGCCTAGAGATGGGAAACTTAGTTTTAGTGAAACTATTGTTGATGTGGTTCCTGTGGTGCACTGGGCCGAGGACGACCTCTTTCCTGGCCTCTATTCACATGGTTTGCTGGCTAATCCATGGTTTTCTGATGGACACACTATTATTATAACAACCATATGGCGTAGCAGGAGTGCAATTGTCTCTATAGATATCTTAAGCGGTGAAGTCTCATGCGTCAGTCCTGACCACACAGACTATTCTTGGAATGTTCTTGCTCTAGATGGAGACAACGTTATTGCTGTTCGTAGCGGCCCAGTGACTATTCCTGGACTCAAGTATGGTTTTCTTATTGAGACAGAAACTAAGGATGTTGTATGGAATTGGGTCGATGTATTAAATCCTATGTTTAATTGCTCTACGAAGGCTAGAACTCTACTCTCAAATATCTTGTTCAGTATATTGAAGATTCCAGTCAAGGATGTTTCCAACTGCGTGACAAAAGGTGCTAGTGAACCTTTTGAAGCTATCTTTGTAGCTCCGTTACCCAAAGGTAATGAGTTGAAACCACTTATTGTTAACCTTCATGGCGGTCCACATTCTACATCAACATCAAGCTTCTCGAAGTCCTTGGCATTTCTCGCTGCCGTAGGATTCAATCTTTTGATTGTGAACTATAGAGGTTCATTGGGGTTCGGTGAGGATGCATTGCAATCTCTTCCTGGAAAAATTGGGTCTCAGGTACTNGTTTTAATGATGAATTTAGAATGCCACTGGATAGAATGTTTTATTTATCTTTTATATATTTTTGCTCAGGATGTCAATGATGTACTTGCCGCATTAGATCACATTATCGACCAGGGACTTGCCAATCCAGCTAAAGTTGCAGTTCTTGGCGGTTCTCATGGAGGTTTTTTGACAACTCATTTGATTGGCCAGGCACCAGATAGATTTGTGGCAGCTGCTGCAAGGAATCCTGTGTGTAACCTTGCTTTAATGGTCGGCACATCAGATATTCCTGATTGGTGTTATGTGGAATGTTATGGAAGGGAAGGAAAAAATTACTTCACGGAAGCACCATCTGCTGAGCACCTAATCCACTTATACCACATGTCTCCTATTCGACATGTCTCAAATGTTAAAACACCTACCATTTTTCTTTTGGGTGCAAAAGATCTTCGTGTTCCATTTTCAAATGGATTGCAATTTGCGCGAGCCTTGAAGGAGAAAGGAGTTGATACGAAGGTGATCGTGTTTCCAGATGATAAGCATCCAATTGACAGGCTTATTCATTTTATCTCTGAATCAGGCCGCAATCGGATTTTGAAAGCTTCCTCAACATTTGTGTGTGGTTCAAGAAGTACCTCAAGTGAGTGGCATTCCCTTTCTCAGCATTTTAGCATCATTGATCCCATGCTTTGTACTTATTTTGTCACTCTCAACTTGGTACAACTGGTTCTGTGCACTCTTGTTCATGTTATTAAGCCACTCATTCTCAATTAA 2700 41.78 MALASTYSIGRINFLRLPLFATAATAPHSQSSQFLRATCLFSRKLSTSLAMDGSKISAVVEEFPSGIDPATEEEYVEQSKLLEEFTKIPNFDKAWTFKSDSGDSVVTFSISQANLLANKKRKYTLSAHISEGNDDSEVNFKWTPFPVEMVGISTIVPSPAGSKFLAVRNPENDSPVQLEIWSAGQLEKEFHIPQSVHGSIYTDGWFEGISWNSNETYIAYIAEEPSPSKPTFTLSGYQKGCSTDKDSTNWKGQGDFKEEWGEAYAGKRQPALFVVNIDSGEVKHVKISEHSLSLGQVVWAPSIGEHQYLVFVGWSPEPRKLGMIYCYNRPCALYAVKAPEFGSEVNEHKLKDESKEDFPIYNLTQNISSAFSPRFSPDGKSLVFLSAHSSVNTGAHSATNSLHRIDWPRDGKLSFSETIVDVVPVVHWAEDDLFPGLYSHGLLANPWFSDGHTIIITTIWRSRSAIVSIDILSGEVSCVSPDHTDYSWNVLALDGDNVIAVRSGPVTIPGLKYGFLIETETKDVVWNWVDVLNPMFNCSTKARTLLSNILFSILKIPVKDVSNCVTKGASEPFEAIFVAPLPKGNELKPLIVNLHGGPHSTSTSSFSKSLAFLAAVGFNLLIVNYRGSLGFGEDALQSLPGKIGSQVLVLMMNLECHWIECFIYLLYIFAQDVNDVLAALDHIIDQGLANPAKVAVLGGSHGGFLTTHLIGQAPDRFVAAAARNPVCNLALMVGTSDIPDWCYVECYGREGKNYFTEAPSAEHLIHLYHMSPIRHVSNVKTPTIFLLGAKDLRVPFSNGLQFARALKEKGVDTKVIVFPDDKHPIDRLIHFISESGRNRILKASSTFVCGSRSTSSEWHSLSQHFSIIDPMLCTYFVTLNLVQLVLCTLVHVIKPLILN 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1112695 1122025 + CmoCh17G001890.1 Cmo17g00189 400572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00189 899 PANTHER SERINE PEPTIDASE S9 FAMILY MEMBER 670 827 - -
Cmo17g00189 899 Pfam Acylamino-acid-releasing enzyme, N-terminal domain 71 341 IPR045550 -
Cmo17g00189 899 ProSitePatterns Prolyl endopeptidase family serine active site. 675 705 IPR002471 GO:0004252|GO:0006508
Cmo17g00189 899 SUPERFAMILY DPP6 N-terminal domain-like 140 509 - -
Cmo17g00189 899 SUPERFAMILY alpha/beta-Hydrolases 581 825 IPR029058 -
Cmo17g00189 899 PANTHER SERINE PEPTIDASE S9 FAMILY MEMBER 50 648 - -
Cmo17g00189 899 Pfam Prolyl oligopeptidase family 671 825 IPR001375 GO:0006508|GO:0008236
Cmo17g00189 899 PANTHER ACYLAMINO-ACID-RELEASING ENZYME-LIKE 50 648 - -
Cmo17g00189 899 Gene3D alpha/beta hydrolase 568 835 IPR029058 -
Cmo17g00189 899 PANTHER ACYLAMINO-ACID-RELEASING ENZYME-LIKE 670 827 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00189 K01303 APEH; acylaminoacyl-peptidase [EC:3.4.19.1] - csv:101207866 1345.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01922 Cmo-Chr1:13758655 Cmo17g00189 Cmo-Chr17:1112695 1.30E-10 dispersed
Cmo08g00459 Cmo-Chr8:2842321 Cmo17g00189 Cmo-Chr17:1112695 3.93E-08 dispersed
Cmo15g01088 Cmo-Chr15:7225033 Cmo17g00189 Cmo-Chr17:1112695 4.30E-06 dispersed
Cmo17g00189 Cmo-Chr17:1112695 Cmo17g01010 Cmo-Chr17:8672986 1.37E-07 dispersed
Cmo17g00189 Cmo-Chr17:1112695 Cmo09g00203 Cmo-Chr9:926991 1.18E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g595 . Blo12g00352 Bda03g00853 . Bpe04g00806 . Bma04g00754 . . Cmo17g00189 . . . . . . . . . . . . . . Cla06g00623 Cam06g0662 Cec06g0665 Cco06g0672 Clacu06g0649 Cmu06g0642 Cre06g1410 Cone14ag0894 . . . . Csa02g01108 Chy05g00368 . . . . . . . . . Sed04g1948 . . . Cma17g00192 . Car17g00170 Cpe12g00164 . Bhi12g02257 Tan06g2468 Cmetu05g0174 . . . Lcy13g0325 . . . . . . . Lsi09g01280 . . Cme05g00514
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009067 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00189 Cmo_Chr17 FPKM 6.236339 7.628238 6.605592 6.225276 8.76627 7.215233 9.101699 7.288126 6.32557 6.669218