Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00193 ATGTCCGAATCGACGAGCCCGATAGCCCAACGGGTTCAGTCTTCTTCTTCTTCTTCTTCTTCGATTGATACCAGAGGAAAACATAGGATACAGGCTGAAGTGAAGCGGCTCGAGCAAGAAGCGAGGATTCTGGAGGAAGAACTGGAACAGCTTGATAAACTGGACAAGGCATCAACAAAATGCAAAGAAATGCTGAGCAACGTGGAAACAAGACCAGACCCCCTTCTCCCACAAACCCGTGGCCCTCTAAACCCGCTATGGGATCGATGGTTCGAAGGTCCGCCGGATTCTAAAGGTTGCAGATGCTGGGAAATTAGAGAAGCCAATCGGCACCGTCCACGTCATTCTTCAAAACCCAATAAGCCTCATCCGATCCATCCACTCCCAAAGCTTGAAGCCGTTTTCGGCCCTGGATCTTCCGGCAGCCATTTCCGAAGCTCTGAACTTCCCACTTTTCCCCTCACAATGACACAGTCTCTGCAACTTTTCACCTCCGCCACCCGCTCTCCCGGCATTTCTCTCTCCAAACACTCCCTCTCAAAACCCTCTCCGTCCACCGCCGCTTTCCGCTTCCCTCTCTCCTTCCCAAAATCGTCGATCAGAGCCTCTTCCTCTCCGGATTCCAATCCTCTGTCATCTGCTTTCACTTCCCAAGTCTTGGTTCCTGAAAATGGCTCCACCGTCGGAGGTGGAGCTGTGTCCTCTTCCGTTACTAGGGAGTTTGTGCCTGTTATGTCTGATTCCACCGCGATTGAGGTCGATACTGTGACGGAGGCTGAATTGAAGGAGAATGGCTTCAGGAGCACCAGGAGGACGAAGCTCGTGTGCACCATTGGCCCTGTTACCTGCGGATTCGAGCAGCTCGAGGCGCTCGCTGTTGGCGGGATGAATGTCGCAAGGATCAATATGTGCCATGGGACTCGAGACTGGCATCGGATGGTAATTGAACGCGTGCGGAGGCTCAATGAGGAGAAGGGCTATGCGGTCGCTATCATGATGGATACTGAAGGGAGTGAAATTCACATGGGTGATCTTGGTGGAGCTTCTTCGGCTAAAGCGGAAGATGGTGAAATCTGGACATTCAGTGTCAGAGCTTTTGATTCAACACTCCCAGAACGCACTATTAATGTTAACTATGGAGGGTTTGCAGAAGATGTGAGAGTGGGTGATGACCTCCTTGTTGATGGTGGAATGGTGAGGTTTGAGGTGATCGAAAAGATCGGTCCTGATGTTAAGTGCCTGTGTACCGACCCGGGATTGTTGTTGCCACGGGCTAATTTGACGTTTTGGAGGGATGGACATCTAGTTCGAGAACGTAATGCCATGCTCCCTACAATTTCTTCTAAGGATTGGTTGGATATTGATTTTGGGATTGCTGAAGGTGTTGATTTTCTTGCCATATCGTTTGTGAAGTCAGCTGAAGTGATTAAACATCTCAAAAGCTATATTGCTGCACGTTCTCGTGGCAGATGCTGTGACATTTCCATCATCGCGAAGATAGAGAGTCTGGACTCATTGAATAACTTGGAAGAAATTATTGTAGCATCAGATGGAGCTATGGTAGCTAGAGGAGATTTAGGAGCTCAAATACCACTGGAACAGGTGCCATCAGTCCAGCAAAAGGTCGTCCAACTATGCAGGCAGTTAAATAAACCAGTTATTGTTGCTTCACAGCTGCTGGAGTCGATGATCGAATATCCTACACCCACCAGAGCGGAAGTTGCTGATATTTCCGAGGCGGTTAGGCAGCGATCAGATGCTCTGATGCTTTCTGGTGAGTCCGCCATGGGCCAGTACCCTGACAAGGCATTAGCTGTTTTGAGAAATGTCAGCCTAAGAATTGAGAAATGGTGGAGGGAAGAGAAACGCCATGAACCTATGGAACTCCCTGAAGTTGGATCTTCATCCTCAGATAGCATCTTAGAAGAGATCTGCAACTCCGCTGCTAAAATGGCCAATAATTTAGAGGTGGATGCAATTTTCGTCTACACAAAGACAGGCCACATGGCATCTCTCCTGTCTCGATGTCGACCCGATTGCCCGATCTTTGCATTTACAGAAACGACATCAGTGAGGAGACGTCTTAACCTGCAATGGGGTTTGATACCCTTCCGGATGAGCTTCTCAGACGACATGGAAAACAACCTCAACAAAATATTTTTGCTGCTCAAAGCCAGAAACTTGATCAAATCAGGTGACCTTGTCATTGCTGTCTCAGACATGTTGCAGTCTATCCAAGTTATGAATGTTCCATAA 2256 48.49 MSESTSPIAQRVQSSSSSSSSIDTRGKHRIQAEVKRLEQEARILEEELEQLDKLDKASTKCKEMLSNVETRPDPLLPQTRGPLNPLWDRWFEGPPDSKGCRCWEIREANRHRPRHSSKPNKPHPIHPLPKLEAVFGPGSSGSHFRSSELPTFPLTMTQSLQLFTSATRSPGISLSKHSLSKPSPSTAAFRFPLSFPKSSIRASSSPDSNPLSSAFTSQVLVPENGSTVGGGAVSSSVTREFVPVMSDSTAIEVDTVTEAELKENGFRSTRRTKLVCTIGPVTCGFEQLEALAVGGMNVARINMCHGTRDWHRMVIERVRRLNEEKGYAVAIMMDTEGSEIHMGDLGGASSAKAEDGEIWTFSVRAFDSTLPERTINVNYGGFAEDVRVGDDLLVDGGMVRFEVIEKIGPDVKCLCTDPGLLLPRANLTFWRDGHLVRERNAMLPTISSKDWLDIDFGIAEGVDFLAISFVKSAEVIKHLKSYIAARSRGRCCDISIIAKIESLDSLNNLEEIIVASDGAMVARGDLGAQIPLEQVPSVQQKVVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADISEAVRQRSDALMLSGESAMGQYPDKALAVLRNVSLRIEKWWREEKRHEPMELPEVGSSSSDSILEEICNSAAKMANNLEVDAIFVYTKTGHMASLLSRCRPDCPIFAFTETTSVRRRLNLQWGLIPFRMSFSDDMENNLNKIFLLLKARNLIKSGDLVIAVSDMLQSIQVMNVP 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1149094 1157239 - CmoCh17G001930.1 Cmo17g00193 400576

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00193 751 ProSitePatterns Pyruvate kinase active site signature. 494 506 IPR018209 GO:0004743|GO:0006096
Cmo17g00193 751 SUPERFAMILY PK C-terminal domain-like 603 749 IPR036918 -
Cmo17g00193 751 MobiDBLite consensus disorder prediction 1 30 - -
Cmo17g00193 751 MobiDBLite consensus disorder prediction 1 25 - -
Cmo17g00193 751 Gene3D - 615 741 IPR036918 -
Cmo17g00193 751 Pfam Pyruvate kinase, alpha/beta domain 642 741 IPR015795 -
Cmo17g00193 751 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 251 620 IPR015813 GO:0003824
Cmo17g00193 751 Pfam Pyruvate kinase, barrel domain 270 619 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo17g00193 751 Pfam GGL domain 31 103 IPR015898 GO:0007186
Cmo17g00193 751 Gene3D - 270 614 IPR040442 -
Cmo17g00193 751 PANTHER PLASTIDIAL PYRUVATE KINASE 1, CHLOROPLASTIC 238 751 - -
Cmo17g00193 751 TIGRFAM pyruv_kin: pyruvate kinase 270 740 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo17g00193 751 Coils Coil 27 57 - -
Cmo17g00193 751 SUPERFAMILY PK beta-barrel domain-like 339 430 IPR011037 -
Cmo17g00193 751 PANTHER PYRUVATE KINASE 238 751 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo17g00193 751 SMART G_gamma_2 31 105 - -
Cmo17g00193 751 Gene3D - 338 444 IPR015806 GO:0004743|GO:0006096
Cmo17g00193 751 PRINTS Pyruvate kinase family signature 573 591 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo17g00193 751 PRINTS Pyruvate kinase family signature 548 572 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo17g00193 751 PRINTS Pyruvate kinase family signature 327 343 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo17g00193 751 PRINTS Pyruvate kinase family signature 462 476 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo17g00193 751 PRINTS Pyruvate kinase family signature 523 547 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo17g00193 751 PRINTS Pyruvate kinase family signature 592 608 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo17g00193 751 PRINTS Pyruvate kinase family signature 496 522 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00193 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - csv:101218017 1042.34
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo14g01801 Cmo17g00193 CCT
Cmo08g01093 Cmo17g00193 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01603 Cmo-Chr1:12271908 Cmo17g00193 Cmo-Chr17:1149094 6.88E-22 dispersed
Cmo09g00504 Cmo-Chr9:2347893 Cmo17g00193 Cmo-Chr17:1149094 2.52E-11 dispersed
Cmo16g00321 Cmo-Chr16:1468814 Cmo17g00193 Cmo-Chr17:1149094 0 dispersed
Cmo17g00193 Cmo-Chr17:1149094 Cmo19g00460 Cmo-Chr19:5546173 1.23E-117 dispersed
Cmo14g01801 Cmo-Chr14:13804488 Cmo17g00193 Cmo-Chr17:1149094 7.01E-38 wgd
Cmo17g00193 Cmo-Chr17:1149094 Cmo19g00015 Cmo-Chr19:106251 1.26E-25 wgd
Cmo17g00193 Cmo-Chr17:1149094 Cmo02g01822 Cmo-Chr2:10314659 1.03E-29 wgd
Cmo17g00193 Cmo-Chr17:1149094 Cmo08g01093 Cmo-Chr8:7016518 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g582 Blo01g00107 Blo12g00347 Bda03g00858 Bda08g00260 . . Bma04g00758 Bma05g01087 Cmo08g01093 Cmo17g00193 . Cma14g01761 . Car14g01587 . . Cpe03g01477 Bhi01g00745 Tan10g0772 . Lac12g2240 Hepe05g1598 . Lcy11g1595 . . . . . . . . . . . Lsi05g01650 Csa02g01117 . Cme06g00561 . . . . Bpe05g00877 . . . Sed02g1357 . Cmo14g01801 Cma08g01118 Cma17g00199 Car08g01001 Car17g00176 Cpe12g00170 Cpe17g00167 Bhi12g02247 Tan06g2475 Cmetu05g0135 . Hepe03g0235 . Lcy13g0318 Cla05g00499 Cam05g0547 Cec05g0560 Cco05g0558 Clacu05g0544 Cmu05g0516 Cre05g0584 Lsi09g01286 Csa03g01278 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006080 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00193 Cmo_Chr17 FPKM 1.193961 0.92892 2.31346 2.673705 10.901143 9.8512 11.717493 3.583302 3.591137 3.315989