Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00201 ATGAGTGCGGGCGCGGCGACGTTCCCGTCTATACTCGACAAACCCCTCAACCAATTGACGGAGGATGACATTTCGCAGCTCACTCGGGAGGATTGTCGCAAATACCTAAAGGAAAAAGGAATGCGGCGGCCGTCATGGAACAAATCTCAGGCGATCCAGCAGGTTATTTCTCTCAAAGCACTGCTTGAACCCTGTGATGATTCCGGCGCCAATGCTCTCAGGAAGGTCGTCGTTTTGCCTCGGGTGAATTCAAATCAAGGCGATTCACCCAAAGAACCGAGTGATGATGCTCAGTTTACAATGTCAGTTGATGAATCTGCGTATAGCAATGTGGAGACTGCAAAATCTACTCCTGAGGATCCACCAGCTGAGCCAGACAACAATGTCACCAGTCCCAGAAATCAATACGAAACAAATGGAGTGGACGGCCAAATGACAATTTTCTATTGTGGCAAAGTGAATGTGTATGATGGAGTTCCACCGGATAAGGCATGGGCAATCATGCATCTTGCAGCTAGTCCAATTCATGTCCCTCAGAATCATCCCTTGGGTGGAACTGCTGCATGTCAGTCTCCACCACGACCTTTGCAGACTTGCAGTGACAAAGATGACTTTTTTCCTCCTAGTGCTACCATGTATCGAAATGTGCATACAGAGAAGATGGTCGAGCACCCTCAGCAGCAGCAGCAGCATGTAAAAGGAACCAGTACTCGAGATTCTGATGTCGAGGGTCAGGCGAGTCGAAAAGTTTCATTACAGAGATATCTTGAAAAGCGAAAAGACAGGTACCTTCGACTAATCCATAATGATGACGTCATGCATGTAGATAACCTTTTGTCGTCTCGTATCTCATTTCGTTCATTTCTCTCCTATCTTTGTGGTTCTGTTTCTGCAAGGGGAAGGTTAAAGAACAAGAAAAATCCAGAATTGTCTTCTTCTAGCCTGGAAGGTTATATGAACCATCATATGAGGACGCACATACCCAATAAGAATTTAGGTCAGTTTGCGACAAGCTCTTTATCCCCTACTGGAGTAGCTAAAGCTTTCGTTGGAACAGCTGACAATCAGCCAAAACTTGCATGTTTTCCTGTCGACCTTAATCTGGGAGCCGCTTTTCTGCAGATATCCAGGAGTGCTGAGTTCGACGTCGTTGATGGCATGCTACACAAAGGATCATCCTTGTGA 1185 46.24 MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGANALRKVVVLPRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAKSTPEDPPAEPDNNVTSPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHVPQNHPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHPQQQQQHVKGTSTRDSDVEGQASRKVSLQRYLEKRKDRYLRLIHNDDVMHVDNLLSSRISFRSFLSYLCGSVSARGRLKNKKNPELSSSSLEGYMNHHMRTHIPNKNLGQFATSSLSPTGVAKAFVGTADNQPKLACFPVDLNLGAAFLQISRSAEFDVVDGMLHKGSSL 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1185419 1189477 - CmoCh17G002010.1 Cmo17g00201 400584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00201 394 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 5 263 IPR040390 -
Cmo17g00201 394 Pfam tify domain 144 172 IPR010399 -
Cmo17g00201 394 ProSiteProfiles Tify domain profile. 138 173 IPR010399 -
Cmo17g00201 394 PANTHER PROTEIN TIFY 4B-LIKE ISOFORM X1 5 263 - -
Cmo17g00201 394 MobiDBLite consensus disorder prediction 109 138 - -
Cmo17g00201 394 SMART tify_2 138 173 IPR010399 -
Cmo17g00201 394 Pfam Jas motif 245 262 IPR018467 -
Cmo17g00201 394 MobiDBLite consensus disorder prediction 123 138 - -
Cmo17g00201 394 MobiDBLite consensus disorder prediction 222 249 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g01098 Cmo17g00201 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00201 Cmo-Chr17:1185419 Cmo18g00061 Cmo-Chr18:388620 5.53E-08 dispersed
Cmo17g00201 Cmo-Chr17:1185419 Cmo08g01098 Cmo-Chr8:7044552 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11367 PF06200 tify 3.70E-15 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00201 - - bhj:120092625 593.193