Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00214 ATGAAGCTCCTTGGCCCCTTTCTTCCACTCCTGGCCTTGGCCCTGGTGGCTGTTCTTCCGGCGAATGGCCAGACCAATACCCCATGTACTGCCTCCATGCTCTCCTCCTTCACCCCTTGCATGAACTTCCTCGCCAACAGCTCTGCAAATGGCACTTCCCCGACCGCCGACTGCTGTAATGCCATCCGATCACTTGCTAGCGGCGGCCGGGACTGCCTCTGCCTCATCGTCACCGGAGGAGTTCCCTTTCAAATACCCATCAATAGAACTCTCGCCATTTCTCTTCCTCGCGCTTGTAACTTGCCTGGTGTCCCCCTCCAATGCAATGCCGCTGCTGCCCCTGTTCCTGCTCCAGGCCCAATTGCTCTTGGACCAAGTTTCCCGCCGGAATCTTCACCGTCGGCGAGTCCTCAAGCGCCGGAACCCACCACGCCGGCTCTTACTCCGGTAGCTGAAACTCCATCTTCTCCGTTGGTTCCTGATGCGGAAGCTCCGACGGGGACGGCCGGAAGCCGCCCAGTTCTGACTCCCTCCTCCTCTGCCGTCCGTTCAAACAGTTTTCCTTTCATAACCTCAACAATGGCGGTGTTCATTAGCGTCCTCAAATCGTTAATTGCGGTTCTCACGGCGTCGATGGCGATGGTTGCGATGTCGCCTCCGACCGGATGCACAACCAGAGAGCTTCTCTTGCTTTCGCCATGTTTGCCTTTCATCTCGGCTCCACCGAACAATCTTTCCGATTCGGTTCCCTCGTCGTGCTGTGAGGCGTTCTCTTCTGCTTACGGTTCCGCTTCACGAACTCTGCCTCCTCTTCAGAGCTCGAAAATTCCAGGAATCCAAGAGCCGGATAGTCCTGCTGAGGAGAACACACCGCCTCCTGCGATGGCCTCACCACCCTCTACACTTGTGTCACCGCCACCACAGCCACCGCCTGCAGATGAATTGCCGCCGTCTCCTTCATCTGCTACAGCAAAAGGTTCCTATTCTACCATCTCAACCTATCATCATCAAGTAGCCAAGCCATGCCAAGAACGTACAAGTACGGCCCAGCCCATACCTGCTCTTAGCAATTCTACCCAAAAATTTACCATTTAA 1095 55.62 MKLLGPFLPLLALALVAVLPANGQTNTPCTASMLSSFTPCMNFLANSSANGTSPTADCCNAIRSLASGGRDCLCLIVTGGVPFQIPINRTLAISLPRACNLPGVPLQCNAAAAPVPAPGPIALGPSFPPESSPSASPQAPEPTTPALTPVAETPSSPLVPDAEAPTGTAGSRPVLTPSSSAVRSNSFPFITSTMAVFISVLKSLIAVLTASMAMVAMSPPTGCTTRELLLLSPCLPFISAPPNNLSDSVPSSCCEAFSSAYGSASRTLPPLQSSKIPGIQEPDSPAEENTPPPAMASPPSTLVSPPPQPPPADELPPSPSSATAKGSYSTISTYHHQVAKPCQERTSTAQPIPALSNSTQKFTI 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1253272 1257465 - CmoCh17G002140.1 Cmo17g00214 400597

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00214 364 Pfam Probable lipid transfer 14 108 IPR016140 -
Cmo17g00214 364 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 12 190 IPR043325 -
Cmo17g00214 364 SMART aai_6 29 108 IPR016140 -
Cmo17g00214 364 MobiDBLite consensus disorder prediction 320 364 - -
Cmo17g00214 364 MobiDBLite consensus disorder prediction 264 279 - -
Cmo17g00214 364 MobiDBLite consensus disorder prediction 286 317 - -
Cmo17g00214 364 MobiDBLite consensus disorder prediction 264 364 - -
Cmo17g00214 364 MobiDBLite consensus disorder prediction 121 144 - -
Cmo17g00214 364 CDD AAI_LTSS 37 101 - -
Cmo17g00214 364 MobiDBLite consensus disorder prediction 121 181 - -
Cmo17g00214 364 Gene3D - 27 108 IPR036312 -
Cmo17g00214 364 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 33 103 IPR036312 -
Cmo17g00214 364 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 12 190 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00214 - - - csv:101209278 251.521
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo14g01763 Cmo17g00214 CCT
Cmo14g01763 Cmo17g00214 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00214 Cmo-Chr17:1253272 Cmo15g00741 Cmo-Chr15:3639614 5.35E-08 dispersed
Cmo14g01763 Cmo-Chr14:13649253 Cmo17g00214 Cmo-Chr17:1253272 2.97E-43 transposed
Cmo14g01762 Cmo-Chr14:13647205 Cmo17g00214 Cmo-Chr17:1253272 3.17E-09 wgd
Cmo17g00214 Cmo-Chr17:1253272 Cmo06g01400 Cmo-Chr6:10257163 1.18E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g529 . . . . . Bpe14g01198 . . . Cmo17g00214 . Cma14g01724 . Car14g01555 Sed12g0943 . Cpe03g01447 Bhi01g00790 Tan10g0820 Cmetu06g2490 Lac12g2266 Hepe05g1567 . Lcy11g1563 Cla06g00596 Cam06g0635 Cec06g0638 Cco06g0641 Clacu06g0621 Cmu06g0614 Cre06g1382 Cone14ag0861 . Cone7ag0264 Cone4ag0254 Lsi05g01619 . . Cme06g00595 Blo02g00532 Blo07g00225 Bda11g00585 Bda13g00110 . Bpe13g00599 Bma02g00834 Bma06g01562 Sed09g0746 . Cmo14g01763 . Cma17g00224 . Car17g00200 Cpe12g00190 . Bhi12g01696 Tan06g2510 Cmetu01g1275 Lac12g2266 Hepe03g0210 . Lcy13g0295 Cla05g00528 Cam05g0579 Cec05g0589 Cco05g0587 Clacu05g0576 Cmu05g0546 Cre05g0615 Lsi09g01308 Csa03g01311 Chy06g00563 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002425 3 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 4 1 2 2 2 2 2 2 2 2 3 2 2 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00214 Cmo_Chr17 FPKM 2.326007 1.91121 0.0 4.027959 0.0 0.0 3.62738 8.32153 0.0 13.010867