Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00219 ATGTTGAAAGCGCAGCCGCCGCCGTTCGAGAGGCAAAAAGAAATGGGGTCGATTCCCGATCCCGGTGAGTTGAGCGAGATGACTCACCCGAGCTTCGATGAGTTCCAAAGGCAGGCGTCTCTGATGGCGAGCTGTACTCTGCTCTGGAAGGAGCTGTCCGATCACTTCACTAATCTGGAGCAAGATCTTCTTAAGAAATCGGACGCACTGAGGCATAAAATTCAAACCCTAGACCATCAGACTAAGGAGTCTCTTGACGAGCTGGAGAAGCGCGAGGTTAGTATCCAGGGTAGTGTTCAGATCGCGCTTGGTAAGGTCGAGAAAAGTATGGAAGCGGCGCTTAAAGCTCTTGAGAAAGACGGCGATGAGAATGGTGAAGTCGATGATGGCGATGGCTTGTTGTTGAAGCTGAAATCATTCTGTTTGGAAATGGATTCTAGTGGATTTTGGAGGTTCATCACTGGTAAGAAGAAGGAATTGGAGGCTCTGAGGGAGAAAATTCAATTGGCTTTAGCTGAATGCATCGATCCGCCGAGATTCGTGCTGGAGGCCATCTCGGAGGTGTTTCCACTGGATAAGAGAGTGGAAAAAAGTGATGGTGGGAATGATTTGGGCTGGGCTTGTGTTTTAGTGCTTGAATCGCTGATTCCAGTTGTTGTAGACCCAGTGATCGGGAAGTCAAGGATTTTGGTTACTCCTAGCATGAAAGAGCGCGCCAAGGAAATCGCTGAAACTTGGAAGGCGAGCTTGGAAGAGCGCGGTGGTATCGAGAATGTTAGGACACCGGACGTGCACACCTTTTTGCAGCACTTGGTTACTTTTGGGATTGTAAAGAGGGAAGATGTTGACTTATATCGGAAGCTTGTGGTTGGATCGGCCTGGCGGAAGCAGATGCCCAAATTGGCAGTATCACTTGGCCTTGGAGATATAATGCCTGATATGATTGAAGAGTTAATCAGCCGAGGACAGCAGCTTGATGCCGTGCATTTTACATATGAAGTTGGTCTTGCGGATAAGTTCCCCCCCGTTCCACTTCTGAAAGCTTATCTGAAGGATGCTAAGAAAGCTGCAGCTGCTATTTCTGAGGATCCAAATAATGCTGGCAGAGCAATGCACCTTGCTGCACGAAAAGAGCAGTCCGCACTCCGAGCTGTTATCAAGTGCATTGAAGAATACAAGCTTCAGGCGGAGTTCCCTCCAGAAAACCTCAAGAAACGTCTTGAACAGCTAGAAAAGGTGAAGGTAGAGAAGAGGAAGCCTGCTGCAGTCCCTGCCAACAAGAGAACACGGGCAAACAATGGTGGTCCTATGCCTCCTGCCAAGGCTGGCCGTTTGACAAATGCATATGTATCTTCATACCCAGCAGCCCCTGCATTTGTCAGGTCTCCCTCGCCCTCTCAGTACCCGGCCGGTGTCCCGCCCTACCATTCCCCACCCTCAATGTATGGCAGCAGAAGCCCACCTGCAAATCCTTATACTTACTCACCCGAAGCTGCTCCACATGCTGGATCGTTTCCCTCACCTCCAATGTCCTATCCTGTATATGGTGGTTACGGCAATGCAATGGCCCCAGCATATCAACCAGCTTACTATCGATAA 1599 49.53 MLKAQPPPFERQKEMGSIPDPGELSEMTHPSFDEFQRQASLMASCTLLWKELSDHFTNLEQDLLKKSDALRHKIQTLDHQTKESLDELEKREVSIQGSVQIALGKVEKSMEAALKALEKDGDENGEVDDGDGLLLKLKSFCLEMDSSGFWRFITGKKKELEALREKIQLALAECIDPPRFVLEAISEVFPLDKRVEKSDGGNDLGWACVLVLESLIPVVVDPVIGKSRILVTPSMKERAKEIAETWKASLEERGGIENVRTPDVHTFLQHLVTFGIVKREDVDLYRKLVVGSAWRKQMPKLAVSLGLGDIMPDMIEELISRGQQLDAVHFTYEVGLADKFPPVPLLKAYLKDAKKAAAAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPPENLKKRLEQLEKVKVEKRKPAAVPANKRTRANNGGPMPPAKAGRLTNAYVSSYPAAPAFVRSPSPSQYPAGVPPYHSPPSMYGSRSPPANPYTYSPEAAPHAGSFPSPPMSYPVYGGYGNAMAPAYQPAYYR 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1285574 1290818 - CmoCh17G002190.1 Cmo17g00219 400602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00219 532 MobiDBLite consensus disorder prediction 418 439 - -
Cmo17g00219 532 Pfam Frigida-like protein 136 420 IPR012474 -
Cmo17g00219 532 PANTHER FRIGIDA-LIKE PROTEIN 4A-RELATED 15 527 - -
Cmo17g00219 532 Coils Coil 153 173 - -
Cmo17g00219 532 MobiDBLite consensus disorder prediction 1 28 - -
Cmo17g00219 532 PANTHER FRIGIDA-LIKE PROTEIN 3-RELATED 15 527 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00219 - - - csv:101210012 963.755
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01117 Cmo17g00219 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01132 Cmo-Chr1:9323984 Cmo17g00219 Cmo-Chr17:1285574 1.99E-41 dispersed
Cmo03g00020 Cmo-Chr3:246333 Cmo17g00219 Cmo-Chr17:1285574 7.32E-15 dispersed
Cmo08g00253 Cmo-Chr8:1558757 Cmo17g00219 Cmo-Chr17:1285574 2.34E-53 dispersed
Cmo17g00219 Cmo-Chr17:1285574 Cmo17g01275 Cmo-Chr17:10014537 3.86E-22 dispersed
Cmo17g00219 Cmo-Chr17:1285574 Cmo08g01117 Cmo-Chr8:7121066 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g502 . . . . . . . . Cmo08g01117 Cmo17g00219 . . . . . . . . . . . . . . Cla06g00587 Cam06g0625 Cec06g0628 Cco06g0633 Clacu06g0612 Cmu06g0605 Cre06g1373 Cone14ag0852 Cone15ag0831 . . . . . . Blo02g00540 . . Bda13g00125 . . Bma02g00849 . Sed04g1907 . . Cma08g01140 Cma17g00231 Car08g01024 Car17g00211 Cpe12g00194 Cpe17g00149 Bhi12g01705 Tan06g2519 Cmetu01g0765 Lac12g2276 Hepe03g0202 . Lcy13g0286 . . . . . . . Lsi09g01317 . . Cme01g01568
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005119 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00219 Cmo_Chr17 FPKM 0.0 0.0 0.0 0.861336 1.755652 0.0 0.938915 0.0 0.0 0.0