Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00221 ATGACTGCATTTATTCAAGCGAAGATCTGCCCTGCAACTATTTCAACGTTGGATAGAATCTCAAGTGAAAATGGGCATAAACTGCGATCCAGGTCTCAAGTTGTGCTACCATCTCAAGAACTTTGTAGGCGTGATTTATTGTGTAATGGCATGTCATTTGTTGCCTTTCTCACGTTCAACAATGCATTGACACCATTGTTGGCTCGGGCCGAAGAAATGCCAAATGACAAGGAGGAAGAGGAAAATGGAGTCATCGGGACGATCAAATCAATATTCGATCCAAATGAGAGAACCAAATCTGGGAAGGTATTGCCCAAGGCTTACCTGAAGTCAGCAAGGGAGGTGGTGAAGACGCTGCGTGAGTCATTACAGGAAGACTCCAAGGATGGTGCTAAATTTAGACGAACTGCAGATGCTGCAAAAGAATCCATTAGAGACTATTTAGGCAATTGGTTGGGGCAACAAGCAGTTGTTCAAGAGGAATCTTACGCTGTGCTAGAGAAAGCAATAAGGTCATTGGCAGGTTTTTATGCAAAGGCTGGGCCATCTGCACCATTGCCGGAAGATGTTAAATCTGATATACTGAATGATTTGGATAAGGCTGAAGAATTCTTGTAA 618 43.2 MTAFIQAKICPATISTLDRISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1304261 1305999 + CmoCh17G002210.1 Cmo17g00221 400604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00221 205 Hamap Photosystem II lipoprotein Psb27 [psb27]. 79 205 IPR025585 GO:0009523|GO:0010206|GO:0010207
Cmo17g00221 205 Pfam Photosystem II Pbs27 50 205 IPR025585 GO:0009523|GO:0010206|GO:0010207
Cmo17g00221 205 Gene3D Photosystem II Pbs27 97 205 IPR038450 -
Cmo17g00221 205 PANTHER PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC 14 205 IPR025585 GO:0009523|GO:0010206|GO:0010207
Cmo17g00221 205 PANTHER PHOTOSYSTEM II D1 PRECURSOR PROCESSING PROTEIN PSB27-H2, CHLOROPLASTIC 14 205 - -
Cmo17g00221 205 Coils Coil 109 129 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00221 - - - csv:101211891 324.709
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00221 Cmo-Chr17:1304261 Cmo19g01012 Cmo-Chr19:8947602 8.24E-06 dispersed
Cmo17g00221 Cmo-Chr17:1304261 Cmo11g01945 Cmo-Chr11:13431528 4.47E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g498 . Blo12g00331 Bda03g00886 . Bpe04g00830 . Bma04g00783 . . Cmo17g00221 . . . . . . . . . . . . . . Cla06g00585 Cam06g0623 Cec06g0625 Cco06g0631 Clacu06g0610 Cmu06g0603 Cre06g1371 . . Cone7ag0249 Cone4ag0243 . . . . . . . . . . . . Sed09g0756 . . . Cma17g00234 . Car17g00213 Cpe12g00197 . Bhi12g01708 Tan06g2521 Cmetu01g0541 . . . . . . . . . . . Lsi09g01319 . . Cme01g01565
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007720 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00221 Cmo_Chr17 FPKM 9.105151 9.61289 70.430367 67.657539 11.457132 12.843417 11.74929 75.189896 73.478683 72.591179