Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00223 ATGGAGGACGGCGTGAGATCTGGGGGTCCGTCGGGGGTTTTGGTGAAGACTAGGAACTCGTCTGGTTGCTTAATTGTTAGAAAAAAAGAGGATGGGTTTGGAGGCGCTGGGGCTTCAGGGTCCCGTTTGGTTAATGCAAAGAAGGAGAAGAAGAGGCCTAGGTTGGTTTTGAGTGATTCTGGGTCCAGTGATGAGTTATTGCTGCCCCATCGCAGACGGGTTGGTCCTGAAACCATTCGGGTCTGTAATGGTTTGAATTCTTTTGGGAAGGATGTTATGGACGAGAGTGGAAGTATAAGAAAGAAGGATAGGTTGCAGTACGTTAAGCGGAATGATGATGATTTAATCAACCGGATGGATGTGGATGGTTTACGAAGAAATGTGGAGACCTTAGAGGTTTTTGATTTCAATGAGTACGATGAAATTGACGGTGAGACTCGGCGGAGGAAGATTTTTAATGACAGTGGAGGACAGTTTCTTGGTTCCATGAAACTGCCTCGAAGTGGCATCGACAGGGAATTTGGAACCGCTTCTAGCAGGCATGCTTTGGTGGACAAGAGAAAGAACTTGTATGCAGAGCAAACCGATTGCTTTGATCGGGATAGGCCTCCCCGAAAGATTAGCTTTGAGTCGGATAATGATGGACCTCATCTCCCGACATCCTTGTTGAGAGATAAGTTTAGGGGTCACTCCGAAGAAGCAATCAGGGTTCAGGGGAAAAATGGAGTTTTGAAGGTCCTGGTAAACAAGAAGAAAAATGTGAGTGGATCATCCGAGATGTATGATCATTGCAAATTAGAAGAAGGTAGAAGGAGTCGAAGGACTGAAGATACTCTGAAGTCGAAAGTGACGGTTACACCTTCAGTGTACCCAGAAACTAAGCTGAATGTGAAACAGGATCCCTTTTCTAAGCCAGAGAAAGACCGGACAGATTTTCAAACACCATCATCGACAAAAAACATAAAGGGTTGCAGTTGGGATTCAGGTGACAGTAGTGTGTCATTGAAGCCGAGAAAAAAGGTTGTTGAAGCTCATAAATCTACCAAGAGGGCAAGTTGTGAAGTTGAAAAACTTCCATGTGAAGAGACTCCCCCAAGTACAGCAAAGGAAGGAAAAATAAAACGAGGCAGTGGAACAGAGAAACAAAAGCTACGTGAAAGGATCAGGGGAATGCTCCTTAGTGCGGGCTGGAAAATCGATTACAGACCCAGAAGGAATAGAGATTATTTAGATGCGGTCTATGTTAATCCCAGTGGCACGGCTTATTGGTCAATTATTAAGGCTTATGATGCCCTTCAAAAGCAATTGAATGAAGAAGGTGCAGAGGCTAAGCCTAGTGCTGATGGTTCATTTACGCCAATATCAGATGATATTCTCAGTCAATTAACTAGGAAAACTCGAAAGAAAATTGAGAACGAATGGAAAAATAAGCAGAGAGATGATAGTGACAGTGAAAATGCCAGAGAAGCAAGTGCACTGAGGTCTGCTGGTACAAAAAATGACATGGACAGCATGGACAGTGATAGCAATGAAGAAAAATTAAGCACTTTCGTAAAGCAGGGTGGAAAATCTTGTAAAAATAAATTGAACGAGAATGGGTGTCCCAGTGTCAACTCCAAAGGTCAAAGCTCTGGTAAGTATTCACGTGATACCACTGTAAAATCTTCTTCTGGATCCAATTCACGTATTTTACATGGAAGGAGAGGTAGAAAGCTTGGATTGTTAGTTCGTGGCTCTAATAGGGGACTAGATTCAGAGAATGATGGATTTGTTCCATATACTGGTAAGAGGACTCTGCTTTCCTGGCTTATCGATTCTGGAACTGTGCAGTTGAGCCAAAAGGTCCGGTACATGAACCGCAGACAGACCCGGGTGATGCTGGAGGGGTGGATTACTAGAGACGGTATTCATTGCGGTTGCTGTAGCAAAATCCTCACTGTCTCAAAGTTTGAGATACATGCTGGAAGCAAATTACGTCAACCTTTTCAAAACATCTTTTTGGAGTCTGGGGTTTCGCTTTTGCAGTGCCAGAGAGATGCATGGAATAGACAGGAGGAGTCTAAACGTCTCAGTTTCCACACAGTTGAAGTTGACGGTGATGATCCGAATGACGATACATGTGGCATCTGTGGAGATGGTGGAGACTTGATCTGTTGTGATGGATGTCCATCAACTTTTCATCAGAGTTGTTTAGATATTCAGATTCCTCCGGGAGATTGGCACTGCCCAAATTGTACTTGCAAGTATTGTGGAGTTGCCAATGTTGATATTTCTCAGGGAGAAAATACCATTGTTCCTGAAATATCTACTTGTGTGTTATGCGAGAAAAAGTTTCATGAATCCTGCAGTGCTGAGATGGATACTCCTGTTCAGTCCAATGGTTCAGTCACCTCTTTTTGTGGCAAGAATTGCAGAGAGCTTTTTGAGAATTTGCAGAAGTATCTGGGGGTGAAACATGAATTAGATGCAGGATTCTCATGGTCTCTTATCCGTAGAACAAATGAAGATCCGGATGTATCTGTTCGTGGGCTTTCTCAAAGGATTGAATGCAACTCTAAACTGGCTGTTGCATTAACAGTTATGGATGAATGCTTTTTGCCAATTGTTGACAGGAGGAGTGGGATAAATCTAATTCATAATGTTCTTTACAACTGCGGATCAAACTTCTATAGGCTTAATTATAGTGGCTTCTACACTGCTATTTTGGAAAGGGGTGATGAGATCATCTCTGCAGCGACAATCAGGTTTCATGGCACTAAGTTAGCCGAGATGCCATTCATCGGAACCCGCCATATATATAGACGTCAAGGAATGTGCCGTCGGCTTTTTTGCGCGATCGAATCTGCTCTCCGCACGCTTAAGGTTGAGAAACTGATTATACCAGCAATCGCCGAGCTGATGCATACATGGAATGTGATTTTTGGCTTTAGTTCTTTGGAGCCATCACTCAAACAAGAAATGAGATTGATGAACATGTTGGTGTTCCCTGGAACAGATATGTTACAGAAGTTGTTAATCCAAGAGTCAATTGTTGAGGAGAATCCGTCTACTGGCTCAGGTGCAAAGCGAACGGATTGTAGAAGTACTGAGTTTAGTAGTCCTAAGATTGATACAGAGACCTCGTCTGGCCACGAACCTCGAAGTTGTGATGACACCGAACAGCATCACTTTAAGGCGAAAACAAATGAAGTTGCTGTCACTAATCTGAATCCTGAATCCGTATCTGTTTCTCTAAATGATACTTCTACTGCTAATAGTCCTCTGGATGCATTTTGTGAAGCTAAAACGCCATGTTCTCCTATGCAAACCGTAACTTCGGATTCTGATTCCGATGATAAGCCTGGAATTCGGCATGGTTTAGAGGATCGTTCGCAGTCGACTTCCCAATGTATGGCAGCTGATACGTCTTTGAACAATTTTCTTGAACCTAAGGTCAAGGTTTCAAATGAAGGAATCATTTGTTCCAACGCTCATGCTGGGCACAAGTTGGCCGACTCCGTTTACGTGAGGAAATCTTTTTCTCCTACTACAGGCAATGGCACGTTTGAGCTCGAAAACAACATACCCGTAATGGATTCTCCTGAAGACGATGCACATGCTAATTCTCTTAAACCTACTCGACCCTTCGAAACTACATCGGATTGCAAAAATGCAATAGCTTATGTGAAAGAAGCTATTTCTGATGGAATTTGTGGCAGTGAAAGTTCTCCACAGTCGTGTGGGGCAAAAGCCAGAGGTGGTCTTCAGGAAGAGAGAGCTGAATCTGGTTCAGTTTGA 3777 43.31 MEDGVRSGGPSGVLVKTRNSSGCLIVRKKEDGFGGAGASGSRLVNAKKEKKRPRLVLSDSGSSDELLLPHRRRVGPETIRVCNGLNSFGKDVMDESGSIRKKDRLQYVKRNDDDLINRMDVDGLRRNVETLEVFDFNEYDEIDGETRRRKIFNDSGGQFLGSMKLPRSGIDREFGTASSRHALVDKRKNLYAEQTDCFDRDRPPRKISFESDNDGPHLPTSLLRDKFRGHSEEAIRVQGKNGVLKVLVNKKKNVSGSSEMYDHCKLEEGRRSRRTEDTLKSKVTVTPSVYPETKLNVKQDPFSKPEKDRTDFQTPSSTKNIKGCSWDSGDSSVSLKPRKKVVEAHKSTKRASCEVEKLPCEETPPSTAKEGKIKRGSGTEKQKLRERIRGMLLSAGWKIDYRPRRNRDYLDAVYVNPSGTAYWSIIKAYDALQKQLNEEGAEAKPSADGSFTPISDDILSQLTRKTRKKIENEWKNKQRDDSDSENAREASALRSAGTKNDMDSMDSDSNEEKLSTFVKQGGKSCKNKLNENGCPSVNSKGQSSGKYSRDTTVKSSSGSNSRILHGRRGRKLGLLVRGSNRGLDSENDGFVPYTGKRTLLSWLIDSGTVQLSQKVRYMNRRQTRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIFLESGVSLLQCQRDAWNRQEESKRLSFHTVEVDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQIPPGDWHCPNCTCKYCGVANVDISQGENTIVPEISTCVLCEKKFHESCSAEMDTPVQSNGSVTSFCGKNCRELFENLQKYLGVKHELDAGFSWSLIRRTNEDPDVSVRGLSQRIECNSKLAVALTVMDECFLPIVDRRSGINLIHNVLYNCGSNFYRLNYSGFYTAILERGDEIISAATIRFHGTKLAEMPFIGTRHIYRRQGMCRRLFCAIESALRTLKVEKLIIPAIAELMHTWNVIFGFSSLEPSLKQEMRLMNMLVFPGTDMLQKLLIQESIVEENPSTGSGAKRTDCRSTEFSSPKIDTETSSGHEPRSCDDTEQHHFKAKTNEVAVTNLNPESVSVSLNDTSTANSPLDAFCEAKTPCSPMQTVTSDSDSDDKPGIRHGLEDRSQSTSQCMAADTSLNNFLEPKVKVSNEGIICSNAHAGHKLADSVYVRKSFSPTTGNGTFELENNIPVMDSPEDDAHANSLKPTRPFETTSDCKNAIAYVKEAISDGICGSESSPQSCGAKARGGLQEERAESGSV 1258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1310846 1318161 - CmoCh17G002230.1 Cmo17g00223 400606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00223 1258 ProSitePatterns Zinc finger PHD-type signature. 707 745 IPR019786 -
Cmo17g00223 1258 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1171 - -
Cmo17g00223 1258 MobiDBLite consensus disorder prediction 367 381 - -
Cmo17g00223 1258 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 891 964 IPR016181 -
Cmo17g00223 1258 MobiDBLite consensus disorder prediction 1012 1039 - -
Cmo17g00223 1258 MobiDBLite consensus disorder prediction 1231 1258 - -
Cmo17g00223 1258 MobiDBLite consensus disorder prediction 1040 1055 - -
Cmo17g00223 1258 MobiDBLite consensus disorder prediction 514 563 - -
Cmo17g00223 1258 MobiDBLite consensus disorder prediction 358 381 - -
Cmo17g00223 1258 MobiDBLite consensus disorder prediction 1012 1055 - -
Cmo17g00223 1258 MobiDBLite consensus disorder prediction 314 329 - -
Cmo17g00223 1258 MobiDBLite consensus disorder prediction 470 488 - -
Cmo17g00223 1258 MobiDBLite consensus disorder prediction 198 220 - -
Cmo17g00223 1258 MobiDBLite consensus disorder prediction 440 459 - -
Cmo17g00223 1258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 694 806 IPR013083 -
Cmo17g00223 1258 MobiDBLite consensus disorder prediction 198 212 - -
Cmo17g00223 1258 MobiDBLite consensus disorder prediction 299 313 - -
Cmo17g00223 1258 CDD PHD2_CHD_II 707 745 - -
Cmo17g00223 1258 MobiDBLite consensus disorder prediction 1099 1126 - -
Cmo17g00223 1258 MobiDBLite consensus disorder prediction 298 329 - -
Cmo17g00223 1258 MobiDBLite consensus disorder prediction 44 58 - -
Cmo17g00223 1258 MobiDBLite consensus disorder prediction 489 503 - -
Cmo17g00223 1258 SMART PHD_3 706 746 IPR001965 -
Cmo17g00223 1258 PANTHER PHD FINGER FAMILY PROTEIN 1 1171 - -
Cmo17g00223 1258 SUPERFAMILY FYVE/PHD zinc finger 695 751 IPR011011 -
Cmo17g00223 1258 Pfam Tify domain binding domain 629 679 IPR032308 -
Cmo17g00223 1258 ProSiteProfiles Zinc finger PHD-type profile. 704 748 IPR019787 -
Cmo17g00223 1258 MobiDBLite consensus disorder prediction 470 564 - -
Cmo17g00223 1258 Pfam PHD-finger 707 748 IPR019787 -
Cmo17g00223 1258 MobiDBLite consensus disorder prediction 33 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00223 - - - cpep:111807565 2262.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01120 Cmo17g00223 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g01257 Cmo-Chr10:12840563 Cmo17g00223 Cmo-Chr17:1310846 2.02E-46 dispersed
Cmo17g00223 Cmo-Chr17:1310846 Cmo20g00365 Cmo-Chr20:1799586 1.89E-71 dispersed
Cmo17g00223 Cmo-Chr17:1310846 Cmo17g01163 Cmo-Chr17:9392299 0 wgd
Cmo17g00223 Cmo-Chr17:1310846 Cmo08g01120 Cmo-Chr8:7135406 0 wgd
Cmo17g00223 Cmo-Chr17:1310846 Cmo08g00335 Cmo-Chr8:2071298 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g496 . . . Bda08g00235 Bpe04g00832 . Bma04g00785 . Cmo08g01120 Cmo17g00223 . . . . . . . . . . . . . . Cla06g00583 Cam06g0621 Cec06g0623 Cco06g0629 Clacu06g0608 Cmu06g0601 Cre06g1369 Cone14ag0851 . . . . . . . . . . . Bpe05g00903 . . . Sed09g1123 . . Cma08g01143 Cma17g00236 Car08g01026 Car17g00215 Cpe12g00199 Cpe17g00147 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . Lsi09g01321 . . Cme01g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006686 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11369 PF16135 TDBD 3.80E-22 No_clan Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00223 Cmo_Chr17 FPKM 12.6112 15.081144 21.069859 20.209707 13.825283 15.406299 14.212877 24.681669 22.880856 22.147787