Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00224 ATGAATGGCGCTACAGCAACAGATTCTGAAGCAGACAACTCTGAATATGTCGAAGTTGATCCCACCGGCAGATATGGAAGATACAATGATGTTCTTGGCAAAGGAGCATCCAAGACAGTTTACAGAGCTTTCGATGAATACGATGGCATTGAAGTGGCATGGAATCAAGTGAAGCTCTGTGATTTCCTTCAAACCCCTGAAGATCTCGAGAGGCTATACAGAGAAATCCATTTATTGAAGACGCTAAAACATAAGAACATAATGAAATTCTGTTCTTCCTGGGTCGACACTGCCAATAGAAACATTAACTTCGTTACAGAGATGTTCACTTCCGGGACTCTCAGACAATACAGGCTGAAGCACAAGAGAGTGAATATCAGAGCTGTGAAGCATTGGTGCAGACAGATTTTAAGAGGGCTTCATTATCTTCATAGCCATGATCCTCCTGTAATCCACAGAGACCTTAAATGTGATAACATTTTTGTTAATGGGAATCAAGGCGAAGTCAAGATTGGTGATCTTGGACTTGCTGCTGTTCTTCGTAAATCCCATGCCGTTCGATGTGTTGGAACACCAGAGTTTATGGCTCCAGAGATATATGAAGAGGAGTACAATGAATTGGTTGATATCTATTCTTTTGGAATGTGTATCCTTGAGATGGTTACTTTTGAATATCCATACAGTGAATGCACTCACCCTGCTCAGATTTACAAGAAAGTTATCTCTGGGAAGAAGCCTGATGCTTTGTATAAGGTGAAGGATCTCGAGGTTCGGGTTTTCGTCGAGAAATGCTTGGCTACCGTGTCGACTAGGCTGTCTGCTAGAGAGCTTTTGAATGACCCTTTTCTTCAAATTGATGGTTGTGATTCTTTACTCACGCCAATAGATTACTATTCTGAATATGATGAAGTGAATAATGGTTTGGATTACTGTTTGATTGATAACGAAGTGAGCGAAATCGATCTTTTTTCGTGTCAAGACGATGAGCATTTGGCAGATGTTGATATCACTATTAAAGGGAGAAGAAGAGGCGACGACGATATATTTCTACGGCTTCGGATTGCGGATAAAGAAGGTCGAATACGAAACATCTACTTCCCGTTCGATTTAGAGAATGATAGTGCTTTAAGTGTTGCAAATGAGATGGTTTCTGAGCTTGATATTACTGATCAAGATGTGAAGAAGATTGCTGATATGATAGATGATGAGATAGCTACATTGGTGCCAGAATGGAAGAGAGGAACAAGCTCTGATGCTAATGTTTGTCACAATTGTGCTTTAAACGGTTCGGCTTTGGATTACGTTTCACCGAACCATCCGACGACGAAGAACCTACACGTTCTTCAGTGTTCTGAGGATCATGGCTGTGCTTCTATCCATGGACGTTTTGAGGAGATTACATATCAAGTTGAGGGATCGGAACAATTCAATGGGTCATCGGAGAATCCGAGCGATATCCATTATGCCGATATTTGGGCGCAGCGAGATGGCAATGAATCACATGGAGGAGCATCAGAACAGCTGAAGCTCAAGAAGGAAGAAAGTAGTGTACATAAGAACAATAATGATCACCAAACAGAATTCCGAACGAGAAACTCGAGCTCATCGAATCGTTTGGTGTCGTTTGCCGATGATCCCGAGAACGAGATTCGACAAGAACTAAGATGGCTCAAGGCTAAATATCAAATGCAGTTGAGGGAGCTAAGGGATCAACAATTAGGAGTCAAGGTCAAATCTTTCAGCTTACAGCCGAATCCGAACCTTGCCGAGACCAACCGTGGAGCTTTCGTATCGTTGCTTTCACCAAATATCAATGAAGCAGCAAGACATAAGGCTGGTATCACTTCACATTCCCCCCATATTGCTGCTGACAGTGTGTTGGAAAACCGAACCTTTCAAGACGACAGCTTCGATGTCGACGAGTCGGGTAGTCCCGAGCTGATGATTACGGCCAAGAGCTTCTATGCAGGGACATTGTTACCTCATTCTCTACAAAGAGCAACCTCACTTCCTGTTGATGCTATAGACTTTTAG 2034 42.53 MNGATATDSEADNSEYVEVDPTGRYGRYNDVLGKGASKTVYRAFDEYDGIEVAWNQVKLCDFLQTPEDLERLYREIHLLKTLKHKNIMKFCSSWVDTANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLHYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAVLRKSHAVRCVGTPEFMAPEIYEEEYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDLEVRVFVEKCLATVSTRLSARELLNDPFLQIDGCDSLLTPIDYYSEYDEVNNGLDYCLIDNEVSEIDLFSCQDDEHLADVDITIKGRRRGDDDIFLRLRIADKEGRIRNIYFPFDLENDSALSVANEMVSELDITDQDVKKIADMIDDEIATLVPEWKRGTSSDANVCHNCALNGSALDYVSPNHPTTKNLHVLQCSEDHGCASIHGRFEEITYQVEGSEQFNGSSENPSDIHYADIWAQRDGNESHGGASEQLKLKKEESSVHKNNNDHQTEFRTRNSSSSNRLVSFADDPENEIRQELRWLKAKYQMQLRELRDQQLGVKVKSFSLQPNPNLAETNRGAFVSLLSPNINEAARHKAGITSHSPHIAADSVLENRTFQDDSFDVDESGSPELMITAKSFYAGTLLPHSLQRATSLPVDAIDF 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1320289 1323729 - CmoCh17G002240.1 Cmo17g00224 400607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00224 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Cmo17g00224 677 Gene3D Phosphorylase Kinase; domain 1 9 107 - -
Cmo17g00224 677 ProSiteProfiles Protein kinase domain profile. 26 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00224 677 Gene3D Transferase(Phosphotransferase) domain 1 109 288 - -
Cmo17g00224 677 Pfam Protein kinase domain 30 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00224 677 SUPERFAMILY Protein kinase-like (PK-like) 29 284 IPR011009 -
Cmo17g00224 677 SMART serkin_6 26 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00224 677 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1-RELATED 1 297 - -
Cmo17g00224 677 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1-RELATED 312 666 - -
Cmo17g00224 677 MobiDBLite consensus disorder prediction 505 526 - -
Cmo17g00224 677 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 349 404 IPR024678 GO:0004674|GO:0005524
Cmo17g00224 677 Coils Coil 551 571 - -
Cmo17g00224 677 MobiDBLite consensus disorder prediction 496 540 - -
Cmo17g00224 677 CDD STKc_WNK 24 283 - -
Cmo17g00224 677 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 312 666 - -
Cmo17g00224 677 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 297 - -
Cmo17g00224 677 Gene3D - 332 414 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g01121 Cmo17g00224 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01209 Cmo-Chr5:9473841 Cmo17g00224 Cmo-Chr17:1320289 0 dispersed
Cmo11g01026 Cmo-Chr11:5621327 Cmo17g00224 Cmo-Chr17:1320289 0 dispersed
Cmo12g01126 Cmo-Chr12:10272669 Cmo17g00224 Cmo-Chr17:1320289 0 dispersed
Cmo13g00886 Cmo-Chr13:7991434 Cmo17g00224 Cmo-Chr17:1320289 1.14E-180 dispersed
Cmo17g00224 Cmo-Chr17:1320289 Cmo18g00155 Cmo-Chr18:1078095 7.44E-173 dispersed
Cmo17g00224 Cmo-Chr17:1320289 Cmo08g01121 Cmo-Chr8:7145129 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74993 PF00069 Pkinase 7.80E-49 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00224 K08867 - csv:101210511 1144.8