Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo17g00224 | ATGAATGGCGCTACAGCAACAGATTCTGAAGCAGACAACTCTGAATATGTCGAAGTTGATCCCACCGGCAGATATGGAAGATACAATGATGTTCTTGGCAAAGGAGCATCCAAGACAGTTTACAGAGCTTTCGATGAATACGATGGCATTGAAGTGGCATGGAATCAAGTGAAGCTCTGTGATTTCCTTCAAACCCCTGAAGATCTCGAGAGGCTATACAGAGAAATCCATTTATTGAAGACGCTAAAACATAAGAACATAATGAAATTCTGTTCTTCCTGGGTCGACACTGCCAATAGAAACATTAACTTCGTTACAGAGATGTTCACTTCCGGGACTCTCAGACAATACAGGCTGAAGCACAAGAGAGTGAATATCAGAGCTGTGAAGCATTGGTGCAGACAGATTTTAAGAGGGCTTCATTATCTTCATAGCCATGATCCTCCTGTAATCCACAGAGACCTTAAATGTGATAACATTTTTGTTAATGGGAATCAAGGCGAAGTCAAGATTGGTGATCTTGGACTTGCTGCTGTTCTTCGTAAATCCCATGCCGTTCGATGTGTTGGAACACCAGAGTTTATGGCTCCAGAGATATATGAAGAGGAGTACAATGAATTGGTTGATATCTATTCTTTTGGAATGTGTATCCTTGAGATGGTTACTTTTGAATATCCATACAGTGAATGCACTCACCCTGCTCAGATTTACAAGAAAGTTATCTCTGGGAAGAAGCCTGATGCTTTGTATAAGGTGAAGGATCTCGAGGTTCGGGTTTTCGTCGAGAAATGCTTGGCTACCGTGTCGACTAGGCTGTCTGCTAGAGAGCTTTTGAATGACCCTTTTCTTCAAATTGATGGTTGTGATTCTTTACTCACGCCAATAGATTACTATTCTGAATATGATGAAGTGAATAATGGTTTGGATTACTGTTTGATTGATAACGAAGTGAGCGAAATCGATCTTTTTTCGTGTCAAGACGATGAGCATTTGGCAGATGTTGATATCACTATTAAAGGGAGAAGAAGAGGCGACGACGATATATTTCTACGGCTTCGGATTGCGGATAAAGAAGGTCGAATACGAAACATCTACTTCCCGTTCGATTTAGAGAATGATAGTGCTTTAAGTGTTGCAAATGAGATGGTTTCTGAGCTTGATATTACTGATCAAGATGTGAAGAAGATTGCTGATATGATAGATGATGAGATAGCTACATTGGTGCCAGAATGGAAGAGAGGAACAAGCTCTGATGCTAATGTTTGTCACAATTGTGCTTTAAACGGTTCGGCTTTGGATTACGTTTCACCGAACCATCCGACGACGAAGAACCTACACGTTCTTCAGTGTTCTGAGGATCATGGCTGTGCTTCTATCCATGGACGTTTTGAGGAGATTACATATCAAGTTGAGGGATCGGAACAATTCAATGGGTCATCGGAGAATCCGAGCGATATCCATTATGCCGATATTTGGGCGCAGCGAGATGGCAATGAATCACATGGAGGAGCATCAGAACAGCTGAAGCTCAAGAAGGAAGAAAGTAGTGTACATAAGAACAATAATGATCACCAAACAGAATTCCGAACGAGAAACTCGAGCTCATCGAATCGTTTGGTGTCGTTTGCCGATGATCCCGAGAACGAGATTCGACAAGAACTAAGATGGCTCAAGGCTAAATATCAAATGCAGTTGAGGGAGCTAAGGGATCAACAATTAGGAGTCAAGGTCAAATCTTTCAGCTTACAGCCGAATCCGAACCTTGCCGAGACCAACCGTGGAGCTTTCGTATCGTTGCTTTCACCAAATATCAATGAAGCAGCAAGACATAAGGCTGGTATCACTTCACATTCCCCCCATATTGCTGCTGACAGTGTGTTGGAAAACCGAACCTTTCAAGACGACAGCTTCGATGTCGACGAGTCGGGTAGTCCCGAGCTGATGATTACGGCCAAGAGCTTCTATGCAGGGACATTGTTACCTCATTCTCTACAAAGAGCAACCTCACTTCCTGTTGATGCTATAGACTTTTAG | 2034 | 42.53 | MNGATATDSEADNSEYVEVDPTGRYGRYNDVLGKGASKTVYRAFDEYDGIEVAWNQVKLCDFLQTPEDLERLYREIHLLKTLKHKNIMKFCSSWVDTANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLHYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAVLRKSHAVRCVGTPEFMAPEIYEEEYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDLEVRVFVEKCLATVSTRLSARELLNDPFLQIDGCDSLLTPIDYYSEYDEVNNGLDYCLIDNEVSEIDLFSCQDDEHLADVDITIKGRRRGDDDIFLRLRIADKEGRIRNIYFPFDLENDSALSVANEMVSELDITDQDVKKIADMIDDEIATLVPEWKRGTSSDANVCHNCALNGSALDYVSPNHPTTKNLHVLQCSEDHGCASIHGRFEEITYQVEGSEQFNGSSENPSDIHYADIWAQRDGNESHGGASEQLKLKKEESSVHKNNNDHQTEFRTRNSSSSNRLVSFADDPENEIRQELRWLKAKYQMQLRELRDQQLGVKVKSFSLQPNPNLAETNRGAFVSLLSPNINEAARHKAGITSHSPHIAADSVLENRTFQDDSFDVDESGSPELMITAKSFYAGTLLPHSLQRATSLPVDAIDF | 677 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 1320289 | 1323729 | - | CmoCh17G002240.1 | Cmo17g00224 | 400607 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo17g00224 | 677 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 150 | 162 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo17g00224 | 677 | Gene3D | Phosphorylase Kinase; domain 1 | 9 | 107 | - | - | |
Cmo17g00224 | 677 | ProSiteProfiles | Protein kinase domain profile. | 26 | 283 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo17g00224 | 677 | Gene3D | Transferase(Phosphotransferase) domain 1 | 109 | 288 | - | - | |
Cmo17g00224 | 677 | Pfam | Protein kinase domain | 30 | 283 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo17g00224 | 677 | SUPERFAMILY | Protein kinase-like (PK-like) | 29 | 284 | IPR011009 | - | |
Cmo17g00224 | 677 | SMART | serkin_6 | 26 | 283 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo17g00224 | 677 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK1-RELATED | 1 | 297 | - | - | |
Cmo17g00224 | 677 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK1-RELATED | 312 | 666 | - | - | |
Cmo17g00224 | 677 | MobiDBLite | consensus disorder prediction | 505 | 526 | - | - | |
Cmo17g00224 | 677 | Pfam | Oxidative-stress-responsive kinase 1 C-terminal domain | 349 | 404 | IPR024678 | GO:0004674|GO:0005524 | |
Cmo17g00224 | 677 | Coils | Coil | 551 | 571 | - | - | |
Cmo17g00224 | 677 | MobiDBLite | consensus disorder prediction | 496 | 540 | - | - | |
Cmo17g00224 | 677 | CDD | STKc_WNK | 24 | 283 | - | - | |
Cmo17g00224 | 677 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 312 | 666 | - | - | |
Cmo17g00224 | 677 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 1 | 297 | - | - | |
Cmo17g00224 | 677 | Gene3D | - | 332 | 414 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo08g01121 | Cmo17g00224 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g01209 | Cmo-Chr5:9473841 | Cmo17g00224 | Cmo-Chr17:1320289 | 0 | dispersed | |
Cmo11g01026 | Cmo-Chr11:5621327 | Cmo17g00224 | Cmo-Chr17:1320289 | 0 | dispersed | |
Cmo12g01126 | Cmo-Chr12:10272669 | Cmo17g00224 | Cmo-Chr17:1320289 | 0 | dispersed | |
Cmo13g00886 | Cmo-Chr13:7991434 | Cmo17g00224 | Cmo-Chr17:1320289 | 1.14E-180 | dispersed | |
Cmo17g00224 | Cmo-Chr17:1320289 | Cmo18g00155 | Cmo-Chr18:1078095 | 7.44E-173 | dispersed | |
Cmo17g00224 | Cmo-Chr17:1320289 | Cmo08g01121 | Cmo-Chr8:7145129 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74993 | PF00069 | Pkinase | 7.80E-49 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo17g00224 | K08867 | - | csv:101210511 | 1144.8 |